Tc04v2_t021730.1

Overview
NameTc04v2_t021730.1
Unique NameTc04v2_t021730.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1650
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
Productglutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial, transcript variant X1
NoteGlutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603327
GenbankXM_007035229.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g021730Tc04v2_g021730Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p021730.1Tc04v2_p021730.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto243580auto243580Theobroma cacaoexon
exon-auto243581auto243581Theobroma cacaoexon
exon-auto243582auto243582Theobroma cacaoexon
exon-auto243583auto243583Theobroma cacaoexon
exon-auto243584auto243584Theobroma cacaoexon
exon-auto243585auto243585Theobroma cacaoexon
exon-auto243586auto243586Theobroma cacaoexon
exon-auto243587auto243587Theobroma cacaoexon
exon-auto243588auto243588Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto243589auto243589Theobroma cacaoCDS
CDS-auto243590auto243590Theobroma cacaoCDS
CDS-auto243591auto243591Theobroma cacaoCDS
CDS-auto243592auto243592Theobroma cacaoCDS
CDS-auto243593auto243593Theobroma cacaoCDS
CDS-auto243594auto243594Theobroma cacaoCDS
CDS-auto243595auto243595Theobroma cacaoCDS
CDS-auto243596auto243596Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t021730.1 ID=Tc04v2_t021730.1|Name=Tc04v2_t021730.1|organism=Theobroma cacao|type=mRNA|length=1650bp
ATGGCTTCCACACTGTTTAGAACTATTCAAATCCACCCGTTTTCGCTCTA
CCCAACTGCAATATGTAGGAGAAGGAACGGTGTTCTTTACTGCACAATGA
AAAGTACTCAAACTCAAACAGCAACACAAGAAAAGCAACAGCCTCCCAAA
GTCAAAGTCTCACAACATACCCAGAGCAAAACACTTGACAAGATTACAAG
AGACTATGAGGCAATAATTGGGATAGAGACACATGTCCAGCTCTCAACTC
TCACCAAGGCTTTTTGTAGTTGTCCTTACAATTATGGATCCCAACCAAAT
ACCAGTATCTGCCCCATTTGCATGGGATTGCCTGGTGCCTTGCCGGTTTT
AAATTCAAAAGTGATTGAATTCGCAGTGAAATTGGGTCTTGCACTCAATT
GCAAGCTATCTCTGAACTCAAAGTTTGATAGAAAGCAGTACTTCTATCCT
GACCTTCCAAAGGGTTACCAAATATCTCAGTTTGATATCCCAATTGCAAC
TGGTGGTTACATTGATTTGGATCTTCCTCTTGAGTTTGGTGGTGGTCATA
GGAAGTTTGGTATTACCAGAGTTCACATGGAGGAGGATGCAGGGAAGCTA
CTTCATTCTGGAAATGGAGATTATTCTCAGGTTGATCTAAATAGAGCAGG
GGTGCCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAACTGGGATTG
AAGCTGCTGAATATGCAGCAGAGTTACAGAGGGTGGTTCGATACTTGGGA
GTGAGTAATGGAAATATGCAAGAAGGCTCACTTCGCTGTGATGTAAATGT
ATCAATTCGACCAGTTGGGCAATCAGAGTTTGGGACAAAGGTTGAGATAA
AAAATTTGAACTCATTTTCATCAATTAACCGGGCCATTGATTTCGAGATA
TCAAGGCAGGCGCTTCTCCATACTCAAGGCCATGATGATCAAATTGTACA
GGAAACTCGTCTATGGGAAGAAGGTGCTCAGAAAACAGTTACAATGAGGA
AGAAGGAAGGACTTGCTGATTATCGTTATTTCCCAGAACCAGACCTCCCC
GAAGTTATTCTCACTCAGGAATATGTTGATGGCATCCGCAATTCTTTGCC
AGAACTTCCAGAAATGAAGCGTCGGAGGTATGAGAAGATGGGCCTAAGCA
TGCAGGATGTTCTTTTCCTGGCAAATGACGTAAATGTGGCAGAATACTTT
GATGCAACAATTTCAAGGGGTGCTGACATTAAGTTGGCTGCCAATTGGAT
AATGGGTGATATTGCTGCCTATATGAAAAATGAAAAGCTTTCTATTAATG
AGATCAAACTTATGCCAGAAGAGCTAGTAGAGCTGATAGCTTCCATTAAA
GGTGGGACTATCAGTGGAAAGATTGGAAAGGAGATATTGTTTGAGCTGCT
AGCCAAAGGTGGTACCGTCAAGGGACTGATAGAAGAGAAGGATCTGGTTC
AGATAGTAGATCCTGTTGAGATTGGGAAAATGGTAGATAAAGTGCTGTCA
GAAAACCCAAAGCAGCTAGAACAATATCGTGGTGGCAAAACTAAGCTACA
GGGTTTTTTTGCCGGTCAGGTAATGAAAATATCAAAAGGCAAAGCAAACC
CCGTCCTTTTGAACAAAATCCTTTTGGAGAAATTAAATGCCAAAAGCTGA
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protein sequence of Tc04v2_p021730.1

>Tc04v2_p021730.1 ID=Tc04v2_p021730.1|Name=Tc04v2_p021730.1|organism=Theobroma cacao|type=polypeptide|length=550bp
MASTLFRTIQIHPFSLYPTAICRRRNGVLYCTMKSTQTQTATQEKQQPPK
VKVSQHTQSKTLDKITRDYEAIIGIETHVQLSTLTKAFCSCPYNYGSQPN
TSICPICMGLPGALPVLNSKVIEFAVKLGLALNCKLSLNSKFDRKQYFYP
DLPKGYQISQFDIPIATGGYIDLDLPLEFGGGHRKFGITRVHMEEDAGKL
LHSGNGDYSQVDLNRAGVPLLEIVSEPDMRTGIEAAEYAAELQRVVRYLG
VSNGNMQEGSLRCDVNVSIRPVGQSEFGTKVEIKNLNSFSSINRAIDFEI
SRQALLHTQGHDDQIVQETRLWEEGAQKTVTMRKKEGLADYRYFPEPDLP
EVILTQEYVDGIRNSLPELPEMKRRRYEKMGLSMQDVLFLANDVNVAEYF
DATISRGADIKLAANWIMGDIAAYMKNEKLSINEIKLMPEELVELIASIK
GGTISGKIGKEILFELLAKGGTVKGLIEEKDLVQIVDPVEIGKMVDKVLS
ENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPVLLNKILLEKLNAKS*
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