Tc04v2_t021700.1

Overview
NameTc04v2_t021700.1
Unique NameTc04v2_t021700.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length912
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
Productputative phosphatidylinositol N-acetylglucosaminyltransferase subunit C, transcript variant X2
NotePhosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603324
GenbankXM_007035220.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g021700Tc04v2_g021700Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p021700.1Tc04v2_p021700.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto243539auto243539Theobroma cacaoexon
exon-auto243540auto243540Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto243541auto243541Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t021700.1 ID=Tc04v2_t021700.1|Name=Tc04v2_t021700.1|organism=Theobroma cacao|type=mRNA|length=912bp
ATGGATACAAGCACCAGTGGTGATTCTTTTCCAACTCGATGCAAATGGAG
AAAAGTTGCATATGGAGGGATGCAACCTGGTTTTGATGACAATCACACAG
ATGGCACTTTCCTTGAAGACATGGTCATGAACGCTAATGTTGTTAAAAGG
AATATGCTTAAGGTGATGCAAGATTCAGTGTCTATCTCACAATATCTATG
CATTGTTGCTCTTGTGGTGCTTGTCTGGACCTACACTCTTAGGTCAACCC
TCAATGAAAACTCCCTCTTGCTTCTTGATGTAAGCCTTCTTGGTTCAGGT
TTCTTAATTCTCCTATTAACTGAAGAAATGCTCTCCCTCAACCTTCTTTT
GCACTATGTCCTCAATGTTTCCTTTTTTACCACTGGTTTGTATGTTTTGG
CCCCTATCTACCAAACCTTGACGAGGTCCATTAGCTCTGATTCCATTTGG
TCAGTAACTGTTTCACTTCTCTTGCTTCATCTTTTCTTACATGACTATTC
TGGATCTACAATAAGAGCTCCAGGGGCTCTTAAGAATCCTAACTTGACTA
GTTGTATTTCCTTGAATGCTTCTATCGTTGCTTCAGTTTTCCTAGCATCT
CGACTACCATCAAGATTACATGTGTTTGCTATTATGCTATTCTCGTTACA
AGTCTTCCTCTTTGCACCATTGGTCACCTATTGTATCAGGAAATATTCTT
TTCGCTTGCACCTTCTGTTCTCCTTTGCACTGATGGCTGTGACTTTGACT
TTTGTTTATAGCCTGCATCGCCTACTTTTTGTGCTACTGGTGGGAATGTT
AGTCTTTGTTAATGTGGTTTGTCCTTACTGGCTTATAAGGATTCAGGAAT
ACAAATTTGAGATCAATGGCCCTTGGGATGAGGCTAAGCTTTGTTTTGAC
ATTACAGATTGA
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protein sequence of Tc04v2_p021700.1

>Tc04v2_p021700.1 ID=Tc04v2_p021700.1|Name=Tc04v2_p021700.1|organism=Theobroma cacao|type=polypeptide|length=304bp
MDTSTSGDSFPTRCKWRKVAYGGMQPGFDDNHTDGTFLEDMVMNANVVKR
NMLKVMQDSVSISQYLCIVALVVLVWTYTLRSTLNENSLLLLDVSLLGSG
FLILLLTEEMLSLNLLLHYVLNVSFFTTGLYVLAPIYQTLTRSISSDSIW
SVTVSLLLLHLFLHDYSGSTIRAPGALKNPNLTSCISLNASIVASVFLAS
RLPSRLHVFAIMLFSLQVFLFAPLVTYCIRKYSFRLHLLFSFALMAVTLT
FVYSLHRLLFVLLVGMLVFVNVVCPYWLIRIQEYKFEINGPWDEAKLCFD
ITD*
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