Tc04v2_t021680.1

Overview
NameTc04v2_t021680.1
Unique NameTc04v2_t021680.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1530
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Product3-isopropylmalate dehydratase large subunit, transcript variant X1
Note3-isopropylmalate dehydratase large subunit
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603322
GenbankXM_007035218.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g021680Tc04v2_g021680Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p021680.1Tc04v2_p021680.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto243442auto243442Theobroma cacaoexon
exon-auto243443auto243443Theobroma cacaoexon
exon-auto243444auto243444Theobroma cacaoexon
exon-auto243445auto243445Theobroma cacaoexon
exon-auto243446auto243446Theobroma cacaoexon
exon-auto243447auto243447Theobroma cacaoexon
exon-auto243448auto243448Theobroma cacaoexon
exon-auto243449auto243449Theobroma cacaoexon
exon-auto243450auto243450Theobroma cacaoexon
exon-auto243451auto243451Theobroma cacaoexon
exon-auto243452auto243452Theobroma cacaoexon
exon-auto243453auto243453Theobroma cacaoexon
exon-auto243454auto243454Theobroma cacaoexon
exon-auto243455auto243455Theobroma cacaoexon
exon-auto243456auto243456Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto243457auto243457Theobroma cacaoCDS
CDS-auto243458auto243458Theobroma cacaoCDS
CDS-auto243459auto243459Theobroma cacaoCDS
CDS-auto243460auto243460Theobroma cacaoCDS
CDS-auto243461auto243461Theobroma cacaoCDS
CDS-auto243462auto243462Theobroma cacaoCDS
CDS-auto243463auto243463Theobroma cacaoCDS
CDS-auto243464auto243464Theobroma cacaoCDS
CDS-auto243465auto243465Theobroma cacaoCDS
CDS-auto243466auto243466Theobroma cacaoCDS
CDS-auto243467auto243467Theobroma cacaoCDS
CDS-auto243468auto243468Theobroma cacaoCDS
CDS-auto243469auto243469Theobroma cacaoCDS
CDS-auto243470auto243470Theobroma cacaoCDS
CDS-auto243471auto243471Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t021680.1 ID=Tc04v2_t021680.1|Name=Tc04v2_t021680.1|organism=Theobroma cacao|type=mRNA|length=1530bp
ATGGCATCTTCGGTGGGTTTTCCACACCCAATGTTTTGCTTGTTCAATAA
CAAGAAAGATTTGAGCCCCTCTGCCTTCGCTTCAACATCACAAACCATTT
ACAAATGCAAGAAACCAGTTTCCAAGAATATTGGGATGGTCATGGCACCA
CAACAATCAGAGCACAAACCTGCCACCACAGGCTCAGTCAAGTCTCCAAT
GACTATGACAGAAAAGATTCTTGCTAGGGCCTCTGAGAAGCCCCAGCTGA
GACCAGGTGACAACGTTTGGGTTAACGTTGATGTATTCATGACTAATGAT
ATTAGTGGTCCTGGTTCCATTGGTATCTTCAAGAAAGAATTTGGTGAAGA
TGCTAAGCTTTGGGACCGTGAAAAGATTGTTGTTATACCTGACCATTATA
TATTCACAAGTGATGAACGTGCAAATCGTAATGTGGATATCTTGAGGGAG
TTTTCCATGGAGCAAAATATCAAGTACTTTTATGATATTAAAGATCTTAG
TAATTTTAAGGCTAACCCCAACTACAAAGGAGTATGCCATGTTGCACTTG
CTCAAGAAGGTCATTGTAGACCTGGAGAGGTTTTGTTAGGGACAGATTCT
CATACCTGTACTGCTGGAGCATTTGGTCAGTTTGCTACAGGAATTGGAAA
TACTGAAGCAGGTTTTGTATTAGGCACCGGGAAGCTTTTGCTCAAGGTAC
CACAAACTTTGAGGTTTGTGATGGATGGTGAAATGCCTCATTATTTGCTT
GCAAAGGATTTGATTTTGCAGATCATTGGTGAAATTTCTGTAGCCGGTGC
AACATATAAATCCATGGAGTTCATTGGCACAACTGTTGAAAGTTTAAGTA
TGGAAGAACGGATGACATTATGCAATATGGTTATTGAAGCTGGTGGAAAG
AATGGTGTTGTTTCTACTGATAGTACTACATTTAAGTACCTTGAGGATAA
AACATCTGTGCCATACGAACCACTTTATAGTGATGCACAAGCAAGTTTTC
TTTCAGAGTTCAGATTTGCTGTCTCAAAGTTGGAGCCCTTGGTAGCTAAG
CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAGTGCAAAGATATTAA
AATTGACAGAGTCTATATTGGATCTTGTACTGGTGGCAAAACAGAAGATT
TTCTTGCTGCTGCCAAAGTCTTTTTAGCCTCAGGCAGAAAGGTCAAAGTC
CCCACATTCCTTGTTCCTGCTACCCAAAAGGTTTGGATGGACATATATAC
TGTCACTGTACCAGGATCTGGTGGCAAGACTTGCTCCCAGATTTTCGAAG
AAGCTGGCTGTGATACACCTGCAAGCCCTAGTTGTGCTGCTTGTATGGGT
GGCCCTAAAGACACATATGCACGCATGAATGAAGCTCAGGTCTGTGTCTC
AACAACAAATAGAAACTTCCCTGGTCGGATGGGACATAAGGAAGGCCAGA
TATATCTTGCTTCCCCATACACAGCAGCTGCCTCTGCTTTGACTGGTTAT
ATCACTGATCCAAGGGAGTTTTTGCAGTAG
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protein sequence of Tc04v2_p021680.1

>Tc04v2_p021680.1 ID=Tc04v2_p021680.1|Name=Tc04v2_p021680.1|organism=Theobroma cacao|type=polypeptide|length=510bp
MASSVGFPHPMFCLFNNKKDLSPSAFASTSQTIYKCKKPVSKNIGMVMAP
QQSEHKPATTGSVKSPMTMTEKILARASEKPQLRPGDNVWVNVDVFMTND
ISGPGSIGIFKKEFGEDAKLWDREKIVVIPDHYIFTSDERANRNVDILRE
FSMEQNIKYFYDIKDLSNFKANPNYKGVCHVALAQEGHCRPGEVLLGTDS
HTCTAGAFGQFATGIGNTEAGFVLGTGKLLLKVPQTLRFVMDGEMPHYLL
AKDLILQIIGEISVAGATYKSMEFIGTTVESLSMEERMTLCNMVIEAGGK
NGVVSTDSTTFKYLEDKTSVPYEPLYSDAQASFLSEFRFAVSKLEPLVAK
PHSPDNRALARECKDIKIDRVYIGSCTGGKTEDFLAAAKVFLASGRKVKV
PTFLVPATQKVWMDIYTVTVPGSGGKTCSQIFEEAGCDTPASPSCAACMG
GPKDTYARMNEAQVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGY
ITDPREFLQ*
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