Tc04v2_t021500.2

Overview
NameTc04v2_t021500.2
Unique NameTc04v2_t021500.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1566
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productpre-mRNA-processing factor 19 homolog 1, transcript variant X2
NotePre-mRNA-processing factor 19 homolog 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603299
GenbankXM_018119532.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g021500Tc04v2_g021500Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p021500.2Tc04v2_p021500.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto243120auto243120Theobroma cacaoexon
exon-auto243121auto243121Theobroma cacaoexon
exon-auto243122auto243122Theobroma cacaoexon
exon-auto243123auto243123Theobroma cacaoexon
exon-auto243124auto243124Theobroma cacaoexon
exon-auto243125auto243125Theobroma cacaoexon
exon-auto243126auto243126Theobroma cacaoexon
exon-auto243127auto243127Theobroma cacaoexon
exon-auto243128auto243128Theobroma cacaoexon
exon-auto243129auto243129Theobroma cacaoexon
exon-auto243130auto243130Theobroma cacaoexon
exon-auto243131auto243131Theobroma cacaoexon
exon-auto243132auto243132Theobroma cacaoexon
exon-auto243133auto243133Theobroma cacaoexon
exon-auto243134auto243134Theobroma cacaoexon
exon-auto243135auto243135Theobroma cacaoexon
exon-auto243136auto243136Theobroma cacaoexon
exon-auto243137auto243137Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto243138auto243138Theobroma cacaoCDS
CDS-auto243139auto243139Theobroma cacaoCDS
CDS-auto243140auto243140Theobroma cacaoCDS
CDS-auto243141auto243141Theobroma cacaoCDS
CDS-auto243142auto243142Theobroma cacaoCDS
CDS-auto243143auto243143Theobroma cacaoCDS
CDS-auto243144auto243144Theobroma cacaoCDS
CDS-auto243145auto243145Theobroma cacaoCDS
CDS-auto243146auto243146Theobroma cacaoCDS
CDS-auto243147auto243147Theobroma cacaoCDS
CDS-auto243148auto243148Theobroma cacaoCDS
CDS-auto243149auto243149Theobroma cacaoCDS
CDS-auto243150auto243150Theobroma cacaoCDS
CDS-auto243151auto243151Theobroma cacaoCDS
CDS-auto243152auto243152Theobroma cacaoCDS
CDS-auto243153auto243153Theobroma cacaoCDS
CDS-auto243154auto243154Theobroma cacaoCDS
CDS-auto243155auto243155Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t021500.2 ID=Tc04v2_t021500.2|Name=Tc04v2_t021500.2|organism=Theobroma cacao|type=mRNA|length=1566bp
ATGAACTGTTCAATCTCCGGCGAGGTGCCGGAAGAGCCCGTCGTCTCCAA
GAAATCCGGCTTGCTTTACGAGAAACGCTTAATCGAACGACACATTTCGG
ATTATGGGAAGTGTCCGGTTACAGGGGAACCGCTTACAATGGACGACATT
GTCCCGGTCAAAGCCGGCAAGATTGTAAAGCCCAGATCGTTAACAGCGGC
TAGCATTCCTGGGATGCTTGGAATGTTTCAGAATGAATGGGATGCTTTAA
TGCTATCCAATTTTGCACTGGAGCAGCAGCTACATGCAGCAAGGCAAGAG
CTAAGTCATGCACTCTACCAGCATGATGCTGCCTGCCGTGTGATTGCAAG
ACTTAAAAAGGAAAGGGATGAAGCCAGGTCATTACTTGCACAGGCTGAAA
GGCAGGCACCCTTGCCAGCATCGGCAGTTACTGCCAATGTTTCTGCTCTT
ACCAATGGAAAGCGAGAGGATGTAGATATGGGGCCTGGGGCAAAGAGAAT
GCGTCCTGGGATTTCTGATAGTATTATTGCTGAGTTAACAGAATGTAACG
CAGCTCTGTCACAACAGCGTAAAAAGCGCCAGATACCTCCGACATTGGCT
CCCATTGATGCTTTGGAGAGGTATACACAACTTTCTAGTCATCCCCTTCA
CAAGACAAACAAACCAGGGATCACTTCAATTGATATCAATCTTTCAAAGG
ATATTGTTGCCACAGGAGGAATTGATTCAAGTGCTGTACTCTTTGATCGA
ACATCTGGAGAGATCTTATCAACGCTTAGTGGTCACTCGAAGAAGGTTAC
AAGTGTAAAATTTGTAGCTCAGAACGATGTTTTTTTAAGTGGATCAGCAG
ATAAGACTGTTCGCATTTGGCAAGGGTCTGAAGATGGAAAGTACGATTGC
AGGCATATTTTGAAGGATCATACAGCTGAGGTGCAAGCTGTCACAGTCCA
TGCCACAAATAACTACTTCGTAACTGCTTCCCTTGACACAACATGGTGCT
TTTATGATCTTTCCTCTGGCATATGCTTGACACAGGTTGAAGACCCTTCA
AATTCCATGGGCTATACATCTGCTGCGTTTCATCCAGATGGTCTCATCCT
TGGGACAGGCACCACCGAAGCTACTGTTAGAATTTGGGATGTGAAGAGTC
GGGGAAATGTTGCCAACTTTGATGGTCACACTGGGGCAGTAACAGCCATA
TCTTTCTCAGAAAATGGTTACTTCCTTGCAACTGCTGCACATGATGGTGT
TAAGTTGTGGGATCTGCGCAAATTGAAGAACTTCCGATCATTTGAATTAT
ATGATCAAGACACACCAACTAACTCTGTGGATTTCGACCATAGTGGAACT
TACCTTGCAATTGCAGGCTCAGATATAAGAGTTTACCAAGTTGGCAGCGT
CAAAGCAGACTGGACTTGCATCAAAACTTTACCTGATTTGTCTGGCACAG
GTAGAGCAACTTGTGTAAAATTTGGTCCAGATGCAAGGTACTTGGCGGTG
GGATCAATGGATCGCAACCTCCGCATATTCGGCCTTCCTGAAGATGATGC
TTCAGCTGAGTCATAA
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protein sequence of Tc04v2_p021500.2

>Tc04v2_p021500.2 ID=Tc04v2_p021500.2|Name=Tc04v2_p021500.2|organism=Theobroma cacao|type=polypeptide|length=522bp
MNCSISGEVPEEPVVSKKSGLLYEKRLIERHISDYGKCPVTGEPLTMDDI
VPVKAGKIVKPRSLTAASIPGMLGMFQNEWDALMLSNFALEQQLHAARQE
LSHALYQHDAACRVIARLKKERDEARSLLAQAERQAPLPASAVTANVSAL
TNGKREDVDMGPGAKRMRPGISDSIIAELTECNAALSQQRKKRQIPPTLA
PIDALERYTQLSSHPLHKTNKPGITSIDINLSKDIVATGGIDSSAVLFDR
TSGEILSTLSGHSKKVTSVKFVAQNDVFLSGSADKTVRIWQGSEDGKYDC
RHILKDHTAEVQAVTVHATNNYFVTASLDTTWCFYDLSSGICLTQVEDPS
NSMGYTSAAFHPDGLILGTGTTEATVRIWDVKSRGNVANFDGHTGAVTAI
SFSENGYFLATAAHDGVKLWDLRKLKNFRSFELYDQDTPTNSVDFDHSGT
YLAIAGSDIRVYQVGSVKADWTCIKTLPDLSGTGRATCVKFGPDARYLAV
GSMDRNLRIFGLPEDDASAES*
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