Tc04v2_t021500.1

Overview
NameTc04v2_t021500.1
Unique NameTc04v2_t021500.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1572
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productpre-mRNA-processing factor 19 homolog 1, transcript variant X1
NotePre-mRNA-processing factor 19 homolog 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603299
GenbankXM_007035184.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g021500Tc04v2_g021500Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p021500.1Tc04v2_p021500.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto243082auto243082Theobroma cacaoexon
exon-auto243083auto243083Theobroma cacaoexon
exon-auto243084auto243084Theobroma cacaoexon
exon-auto243085auto243085Theobroma cacaoexon
exon-auto243086auto243086Theobroma cacaoexon
exon-auto243087auto243087Theobroma cacaoexon
exon-auto243088auto243088Theobroma cacaoexon
exon-auto243089auto243089Theobroma cacaoexon
exon-auto243090auto243090Theobroma cacaoexon
exon-auto243091auto243091Theobroma cacaoexon
exon-auto243092auto243092Theobroma cacaoexon
exon-auto243093auto243093Theobroma cacaoexon
exon-auto243094auto243094Theobroma cacaoexon
exon-auto243095auto243095Theobroma cacaoexon
exon-auto243096auto243096Theobroma cacaoexon
exon-auto243097auto243097Theobroma cacaoexon
exon-auto243098auto243098Theobroma cacaoexon
exon-auto243099auto243099Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto243100auto243100Theobroma cacaoCDS
CDS-auto243101auto243101Theobroma cacaoCDS
CDS-auto243102auto243102Theobroma cacaoCDS
CDS-auto243103auto243103Theobroma cacaoCDS
CDS-auto243104auto243104Theobroma cacaoCDS
CDS-auto243105auto243105Theobroma cacaoCDS
CDS-auto243106auto243106Theobroma cacaoCDS
CDS-auto243107auto243107Theobroma cacaoCDS
CDS-auto243108auto243108Theobroma cacaoCDS
CDS-auto243109auto243109Theobroma cacaoCDS
CDS-auto243110auto243110Theobroma cacaoCDS
CDS-auto243111auto243111Theobroma cacaoCDS
CDS-auto243112auto243112Theobroma cacaoCDS
CDS-auto243113auto243113Theobroma cacaoCDS
CDS-auto243114auto243114Theobroma cacaoCDS
CDS-auto243115auto243115Theobroma cacaoCDS
CDS-auto243116auto243116Theobroma cacaoCDS
CDS-auto243117auto243117Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t021500.1 ID=Tc04v2_t021500.1|Name=Tc04v2_t021500.1|organism=Theobroma cacao|type=mRNA|length=1572bp
ATGAACTGTTCAATCTCCGGCGAGGTGCCGGAAGAGCCCGTCGTCTCCAA
GAAATCCGGCTTGCTTTACGAGAAACGCTTAATCGAACGACACATTTCGG
ATTATGGGAAGTGTCCGGTTACAGGGGAACCGCTTACAATGGACGACATT
GTCCCGGTCAAAGCCGGCAAGATTGTAAAGCCCAGATCGTTAACAGCGGC
TAGCATTCCTGGGATGCTTGGAATGTTTCAGAATGAATGGGATGCTTTAA
TGCTATCCAATTTTGCACTGGAGCAGCAGCTACATGCAGCAAGGCAAGAG
CTAAGTCATGCACTCTACCAGCATGATGCTGCCTGCCGTGTGATTGCAAG
ACTTAAAAAGGAAAGGGATGAAGCCAGGTCATTACTTGCACAGGCTGAAA
GGCAGGCACCCTTGCCAGCATCGGCAGTTACTGCCAATGTTTCTGCTCTT
ACCAATGGAAAGCGAGCTGCAGAGGATGTAGATATGGGGCCTGGGGCAAA
GAGAATGCGTCCTGGGATTTCTGATAGTATTATTGCTGAGTTAACAGAAT
GTAACGCAGCTCTGTCACAACAGCGTAAAAAGCGCCAGATACCTCCGACA
TTGGCTCCCATTGATGCTTTGGAGAGGTATACACAACTTTCTAGTCATCC
CCTTCACAAGACAAACAAACCAGGGATCACTTCAATTGATATCAATCTTT
CAAAGGATATTGTTGCCACAGGAGGAATTGATTCAAGTGCTGTACTCTTT
GATCGAACATCTGGAGAGATCTTATCAACGCTTAGTGGTCACTCGAAGAA
GGTTACAAGTGTAAAATTTGTAGCTCAGAACGATGTTTTTTTAAGTGGAT
CAGCAGATAAGACTGTTCGCATTTGGCAAGGGTCTGAAGATGGAAAGTAC
GATTGCAGGCATATTTTGAAGGATCATACAGCTGAGGTGCAAGCTGTCAC
AGTCCATGCCACAAATAACTACTTCGTAACTGCTTCCCTTGACACAACAT
GGTGCTTTTATGATCTTTCCTCTGGCATATGCTTGACACAGGTTGAAGAC
CCTTCAAATTCCATGGGCTATACATCTGCTGCGTTTCATCCAGATGGTCT
CATCCTTGGGACAGGCACCACCGAAGCTACTGTTAGAATTTGGGATGTGA
AGAGTCGGGGAAATGTTGCCAACTTTGATGGTCACACTGGGGCAGTAACA
GCCATATCTTTCTCAGAAAATGGTTACTTCCTTGCAACTGCTGCACATGA
TGGTGTTAAGTTGTGGGATCTGCGCAAATTGAAGAACTTCCGATCATTTG
AATTATATGATCAAGACACACCAACTAACTCTGTGGATTTCGACCATAGT
GGAACTTACCTTGCAATTGCAGGCTCAGATATAAGAGTTTACCAAGTTGG
CAGCGTCAAAGCAGACTGGACTTGCATCAAAACTTTACCTGATTTGTCTG
GCACAGGTAGAGCAACTTGTGTAAAATTTGGTCCAGATGCAAGGTACTTG
GCGGTGGGATCAATGGATCGCAACCTCCGCATATTCGGCCTTCCTGAAGA
TGATGCTTCAGCTGAGTCATAA
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protein sequence of Tc04v2_p021500.1

>Tc04v2_p021500.1 ID=Tc04v2_p021500.1|Name=Tc04v2_p021500.1|organism=Theobroma cacao|type=polypeptide|length=524bp
MNCSISGEVPEEPVVSKKSGLLYEKRLIERHISDYGKCPVTGEPLTMDDI
VPVKAGKIVKPRSLTAASIPGMLGMFQNEWDALMLSNFALEQQLHAARQE
LSHALYQHDAACRVIARLKKERDEARSLLAQAERQAPLPASAVTANVSAL
TNGKRAAEDVDMGPGAKRMRPGISDSIIAELTECNAALSQQRKKRQIPPT
LAPIDALERYTQLSSHPLHKTNKPGITSIDINLSKDIVATGGIDSSAVLF
DRTSGEILSTLSGHSKKVTSVKFVAQNDVFLSGSADKTVRIWQGSEDGKY
DCRHILKDHTAEVQAVTVHATNNYFVTASLDTTWCFYDLSSGICLTQVED
PSNSMGYTSAAFHPDGLILGTGTTEATVRIWDVKSRGNVANFDGHTGAVT
AISFSENGYFLATAAHDGVKLWDLRKLKNFRSFELYDQDTPTNSVDFDHS
GTYLAIAGSDIRVYQVGSVKADWTCIKTLPDLSGTGRATCVKFGPDARYL
AVGSMDRNLRIFGLPEDDASAES*
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