Tc04v2_t021390.4

Overview
NameTc04v2_t021390.4
Unique NameTc04v2_t021390.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1143
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Productactin-related protein 2/3 complex subunit 2B, transcript variant X3
NoteActin-related protein 2/3 complex subunit 2B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603286
GenbankXM_018119888.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g021390Tc04v2_g021390Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p021390.4Tc04v2_p021390.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto242893auto242893Theobroma cacaoexon
exon-auto242894auto242894Theobroma cacaoexon
exon-auto242895auto242895Theobroma cacaoexon
exon-auto242896auto242896Theobroma cacaoexon
exon-auto242897auto242897Theobroma cacaoexon
exon-auto242898auto242898Theobroma cacaoexon
exon-auto242899auto242899Theobroma cacaoexon
exon-auto242900auto242900Theobroma cacaoexon
exon-auto242901auto242901Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto242902auto242902Theobroma cacaoCDS
CDS-auto242903auto242903Theobroma cacaoCDS
CDS-auto242904auto242904Theobroma cacaoCDS
CDS-auto242905auto242905Theobroma cacaoCDS
CDS-auto242906auto242906Theobroma cacaoCDS
CDS-auto242907auto242907Theobroma cacaoCDS
CDS-auto242908auto242908Theobroma cacaoCDS
CDS-auto242909auto242909Theobroma cacaoCDS
CDS-auto242910auto242910Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t021390.4 ID=Tc04v2_t021390.4|Name=Tc04v2_t021390.4|organism=Theobroma cacao|type=mRNA|length=1143bp
ATGAGCAACAAGATGCATTTTAGAGTTAGTTATCAAATTTGCATTCTTGC
CGACCAAAACCACTCTAACAATCAATGTTATTCCTTTCATGACAGTGCAG
AAAAGCCTATAGAGGTCGATCATCACTTGTATGAATTTGGCTCCGTTGAA
TACCACGTTAAGTCTTCAGCATCTGATCCACAATTTACCTACTTGTCAAT
ATCAACTCCACTACTGACCCAAGGAGTCTTGCTTTCATATGGGCTATCAC
CATATACCACACAAATGGTAAGGGAAATCTCTGCTGATTTTCTGGAGATC
GTAGAACCTGCAAAAGAAGGATACCAACTTACTCTAAGACTTGATTTTTC
TAAGATTCCACGTGACGTAGACTCTCTGAAGGTAATTACAGAAGTTTCCT
CTGTCCAAGCCGTTATACTAAGCTCTCAGTTGAAAGAAATGCTGCGGAAT
GTGAATTCCTGGGATACATCTCAAGGGATGTACAAACCAATCAAACTTGT
TTATCACCCAAGAGAACCTTTCTATGTCATCAGACAGTCTCAAAAAATAA
TAGCAGTATTCCCCATGCGCTTCAAAGAATATTCAGATGTGATCATCGCA
ACATCCTTCTTTCAGGAACTCATGGATGTGGGAAGTTCAGAAAAATGGGC
TAAAGTACCTCCTTGCAGCTGGTCACCAATTCCTCCTCCAGAACTTAGAG
GGGAACCTTTCGAAGATTTGAGCACTAATGGAGGATTTGTCTCTTTTGAT
ATATCATCACGCCACATTGAAGGTAAAAGACTGGACAAGACTGTCTGGAG
TCTATTAAATTTCTATGCCTATGTGAAACATCATGTAAAGTGCACCAGAG
GTTTCATACAAAGAAGGATGAGAAAGCGGTTGGAAAGCTTGGTTGAGGTC
CTGCAAAATTCAAGCTTAGAAGAAGATGGACGTATTAAAAAAGTTACAGG
ATGGCGATACATGAAAAAACTGGTCACATTACCATCAAAATCTAAAATTC
TCAAACGAAGATGTGGTGATTTCACAGGGAAGATCAAGAGAATCCGTTTC
CGGATTAAAATCCATGGATTTGGGCGCTTTCGTAGAAAATGGTTGACAAT
GCCAAAGTTCTCTTCTTCAATAGGATATACTAAACTAGAATAA
back to top

protein sequence of Tc04v2_p021390.4

>Tc04v2_p021390.4 ID=Tc04v2_p021390.4|Name=Tc04v2_p021390.4|organism=Theobroma cacao|type=polypeptide|length=381bp
MSNKMHFRVSYQICILADQNHSNNQCYSFHDSAEKPIEVDHHLYEFGSVE
YHVKSSASDPQFTYLSISTPLLTQGVLLSYGLSPYTTQMVREISADFLEI
VEPAKEGYQLTLRLDFSKIPRDVDSLKVITEVSSVQAVILSSQLKEMLRN
VNSWDTSQGMYKPIKLVYHPREPFYVIRQSQKIIAVFPMRFKEYSDVIIA
TSFFQELMDVGSSEKWAKVPPCSWSPIPPPELRGEPFEDLSTNGGFVSFD
ISSRHIEGKRLDKTVWSLLNFYAYVKHHVKCTRGFIQRRMRKRLESLVEV
LQNSSLEEDGRIKKVTGWRYMKKLVTLPSKSKILKRRCGDFTGKIKRIRF
RIKIHGFGRFRRKWLTMPKFSSSIGYTKLE*
back to top