Tc04v2_t021030.2

Overview
NameTc04v2_t021030.2
Unique NameTc04v2_t021030.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length738
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productuncharacterized LOC18603245, transcript variant X3
NoteRNA-binding (RRM/RBD/RNP motifs) family protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603245
GenbankXM_018119515.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g021030Tc04v2_g021030Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p021030.2Tc04v2_p021030.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto241427auto241427Theobroma cacaoexon
exon-auto241428auto241428Theobroma cacaoexon
exon-auto241429auto241429Theobroma cacaoexon
exon-auto241430auto241430Theobroma cacaoexon
exon-auto241431auto241431Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto241432auto241432Theobroma cacaoCDS
CDS-auto241433auto241433Theobroma cacaoCDS
CDS-auto241434auto241434Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t021030.2 ID=Tc04v2_t021030.2|Name=Tc04v2_t021030.2|organism=Theobroma cacao|type=mRNA|length=738bp
ATGAGCAGTGAAACTAAAATATCACTTGACAAGAAAGAAAAGTCATGTAT
TCCTACAGAGTCCATAAGTGAGAGGGAGGAGGGTAGCAGTTTAAATTTAC
CCAACTCTGATCATGTAAAATCAGGACCAAACTATCCCGTGCCTCCTTCA
ATTAGCAGAGAAGAGCTTAATAGCAGTTCACCTATGCGTTCCACCAAAGA
AGGATCTAAGGAAAACATGGTACTGGACAGATTTTTAACCCAAAATATTG
AGAAGCACAGTATCCTTACAGCTTTCTGTGATTGCTGGCCAATTGTAAAT
GTAGAGGAAGTTTCCCTTACTAAACAGAGCATGTTCAAAGATTTTGTGGT
GCATTTTGAGACAAGGGAAGGTTACCAAAATGCTCTCAAGAAAACTAACC
TGATGGTTCTGAATGCAGAAGCCTTTGTGGAGGCATCTTCTTCAGAAGAC
ATGGATGATGCAATTTCCATTCCTGATCTGATTGGCGATCCTGATGCTCC
AGTTGCACTAGTGAAGAATCCTACAAAAACAGTTAAAGTCAAACAACTGT
CTGAGGATATAAGCTCACAACAGCTAAAGGAAGCTCTTGCTTTCTGTCAA
TCTGGCATCTCCAGCTTTTACTTGGGTTCCACAAGTTCTGTTTTATACGT
GGAGTTTGAGACAGAAGATGCCAAAGAGGGCACTTGCAGAACATTCCATA
CTTGTATCAGGAAAGGAGCTGCCAATCCTCAGGATTGA
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protein sequence of Tc04v2_p021030.2

>Tc04v2_p021030.2 ID=Tc04v2_p021030.2|Name=Tc04v2_p021030.2|organism=Theobroma cacao|type=polypeptide|length=246bp
MSSETKISLDKKEKSCIPTESISEREEGSSLNLPNSDHVKSGPNYPVPPS
ISREELNSSSPMRSTKEGSKENMVLDRFLTQNIEKHSILTAFCDCWPIVN
VEEVSLTKQSMFKDFVVHFETREGYQNALKKTNLMVLNAEAFVEASSSED
MDDAISIPDLIGDPDAPVALVKNPTKTVKVKQLSEDISSQQLKEALAFCQ
SGISSFYLGSTSSVLYVEFETEDAKEGTCRTFHTCIRKGAANPQD*
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