Tc04v2_t018720.1

Overview
NameTc04v2_t018720.1
Unique NameTc04v2_t018720.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2013
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 21 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Productprimary amine oxidase
NotePrimary amine oxidase (Fragment)
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602967
GenbankXM_018119164.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g018720Tc04v2_g018720Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p018720.1Tc04v2_p018720.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto236953auto236953Theobroma cacaoexon
exon-auto236954auto236954Theobroma cacaoexon
exon-auto236955auto236955Theobroma cacaoexon
exon-auto236956auto236956Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto236957auto236957Theobroma cacaoCDS
CDS-auto236958auto236958Theobroma cacaoCDS
CDS-auto236959auto236959Theobroma cacaoCDS
CDS-auto236960auto236960Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t018720.1 ID=Tc04v2_t018720.1|Name=Tc04v2_t018720.1|organism=Theobroma cacao|type=mRNA|length=2013bp
ATGGCTTCACCATTAAATGTAGCACTACTCTTCTCCATCTTCTCCATCTT
CTCTATATCACCAATCACATGCTCTAATCCCCATCCATTGGACTCCCTGA
CCCCAGCCGAGCTCCACCAGGTTCGAGCCATTGTCCACAAATCCTATCCC
AGCTCAAAGTACAAGCTAACCTTCCAATATGTAGGCTTAGAAGAGCCAGA
CAAACCGGCCATGCTTTCATGGCTGTCAAAGCCCACCTCCAAAGCCCCAC
CTCGCCGAGCTTTTGTCATTGCTCGGCTCAACAAACAAAGTCACGAAATT
ATAGTAGACTTGTCAGAACGTTCCATTATTTCAGATGAAGTCTACGATGG
GTCTGGCTACCCTTTACTAACCATCGAGGAACAAGAAGCTGCGATTGACT
TGGCAGTTAAACATGAACCGTTTTTAGCATCACTTAAAAAGAGAGGCCTT
AATGCCTCCGAAGTCGTTTGCTCCACTCAAACGATTGGGTGGTTTGGGGA
AAAGAAGTCCAAAAGAGAGCTGAAAATCCCATGCTACTATTTGGATGGGA
CGGTTAATATGTACTTGAGGCCGATAGAAGGAATATCGGTAACTGTTGAT
CTTGAGGAGATGAAAATTTCTCAATACACTGACAGATTTGTGGCTGCAAT
GCCAAAAGCTGAGGGAACTGAGTATCGAGCTTCCATGGTAACACCACCTC
TCGGTCCACTTCTCAATGGTGCTCCCGCATCACAGCCAGGCAGAACAGGG
TTGAAGATTGATGGAAAAACCGTCAGATGGGCCAACTGGAGGTTCCACCT
AGGATTTGATGCTCGAGCTGGTGCAGTAATCTCTCTAGCCTCCATCTACG
ACTCTGAACAGAGAAAATATCGACAAGTACTGTATAGAGGATTCATATCC
GAGCTCTTCATTCCATACCAGGACACAACCGAGGAATGGTACCACATAAC
ATTTCTCGACTGTGGCGAATTCGGGTTCGGTCTCTCAGCAGTTTCATTGG
AGCCCCTCAACGACTGTCCGGCCAATGCAGTTTTCTTTGATGGTTACTAT
GCTGACCAAGATGGCAAGCCTGTCAAAGTGGAAGATGCCATGTGCATATT
TGAGAGACATCCCGGGGACATAATGTGGAGGCATACAGAGGCAGAGATTC
CAAATCTAGAGATCAGAGAAGTGAGACCAGAAGTCAGTCTTGTGGTGAGA
ATGGTGGCAACTGTGGGCAACTATGATTATATACTTGATTGGGAATTCAA
GCCAAGTGGATCCATCAAATTTGGGGTTGGGCTCACAGGAGTGCTAGAAG
TGAAGGCTGCACCATACACCCACACAGATCAGATAAAAGAGGAAGCCTAT
GGTACGCTTATAGCGGACAATACCATTGGTGTACACCACGATCACTTCAT
AACATACCATCTTGATCTAGATATTGATGGTGATGCCAATTCTCTTGTGA
AGACTAATTTGGTCACTAAACGAGTCACAGACAAAAGCATACCTAGAAAA
AGTTATTGGACAGTTGAACATGAAACAGCTAAGACCGAAGCTGATGCAAG
GATCAAACTTGGCTTGAAACCAGAAGAGCTGGTAGTGGTGAACCCAAACA
AGAGAACTAAACCTGGAAACAAAGTTGGGTATCGTTTGCTTCCAGGATCA
GCAGCAGGGCCACTTTTAACCCTAGATGATTACCCGCAAATCCGAGCTGC
CTTCACAAATTATAATGTGTGGGTGACTCCATATAACAAATCTGAGAAAT
GGGCTGGAGGGCTATTTGCTGATCAGAGTCGAGGGGATGATACCTTAGCG
GTATGGAGCAGCAGGAATAGGAACATTGAGAATAAGGATATTGTGCTGTG
GTACACCATGGGCTTTCACCATGTACCTTGCCAGGAAGATTTTCCAGTGA
TGCCAACATTGAGCGGCGGATTTGAGCTCAGACCAACTAATTTCTTTGAG
TACAATCCTGTACTTAAAACCAGACCTCCTCTCCATGCAAGTTGGCCTAA
TTGCACCACATGA
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protein sequence of Tc04v2_p018720.1

>Tc04v2_p018720.1 ID=Tc04v2_p018720.1|Name=Tc04v2_p018720.1|organism=Theobroma cacao|type=polypeptide|length=671bp
MASPLNVALLFSIFSIFSISPITCSNPHPLDSLTPAELHQVRAIVHKSYP
SSKYKLTFQYVGLEEPDKPAMLSWLSKPTSKAPPRRAFVIARLNKQSHEI
IVDLSERSIISDEVYDGSGYPLLTIEEQEAAIDLAVKHEPFLASLKKRGL
NASEVVCSTQTIGWFGEKKSKRELKIPCYYLDGTVNMYLRPIEGISVTVD
LEEMKISQYTDRFVAAMPKAEGTEYRASMVTPPLGPLLNGAPASQPGRTG
LKIDGKTVRWANWRFHLGFDARAGAVISLASIYDSEQRKYRQVLYRGFIS
ELFIPYQDTTEEWYHITFLDCGEFGFGLSAVSLEPLNDCPANAVFFDGYY
ADQDGKPVKVEDAMCIFERHPGDIMWRHTEAEIPNLEIREVRPEVSLVVR
MVATVGNYDYILDWEFKPSGSIKFGVGLTGVLEVKAAPYTHTDQIKEEAY
GTLIADNTIGVHHDHFITYHLDLDIDGDANSLVKTNLVTKRVTDKSIPRK
SYWTVEHETAKTEADARIKLGLKPEELVVVNPNKRTKPGNKVGYRLLPGS
AAGPLLTLDDYPQIRAAFTNYNVWVTPYNKSEKWAGGLFADQSRGDDTLA
VWSSRNRNIENKDIVLWYTMGFHHVPCQEDFPVMPTLSGGFELRPTNFFE
YNPVLKTRPPLHASWPNCTT*
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