Tc04v2_t017860.1

Overview
NameTc04v2_t017860.1
Unique NameTc04v2_t017860.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1299
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 53 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productglutamine synthetase leaf isozyme, chloroplastic
NoteGlutamine synthetase leaf isozyme, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602866
GenbankXM_018119523.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g017860Tc04v2_g017860Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p017860.1Tc04v2_p017860.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto235161auto235161Theobroma cacaoexon
exon-auto235162auto235162Theobroma cacaoexon
exon-auto235163auto235163Theobroma cacaoexon
exon-auto235164auto235164Theobroma cacaoexon
exon-auto235165auto235165Theobroma cacaoexon
exon-auto235166auto235166Theobroma cacaoexon
exon-auto235167auto235167Theobroma cacaoexon
exon-auto235168auto235168Theobroma cacaoexon
exon-auto235169auto235169Theobroma cacaoexon
exon-auto235170auto235170Theobroma cacaoexon
exon-auto235171auto235171Theobroma cacaoexon
exon-auto235172auto235172Theobroma cacaoexon
exon-auto235173auto235173Theobroma cacaoexon
exon-auto235174auto235174Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto235175auto235175Theobroma cacaoCDS
CDS-auto235176auto235176Theobroma cacaoCDS
CDS-auto235177auto235177Theobroma cacaoCDS
CDS-auto235178auto235178Theobroma cacaoCDS
CDS-auto235179auto235179Theobroma cacaoCDS
CDS-auto235180auto235180Theobroma cacaoCDS
CDS-auto235181auto235181Theobroma cacaoCDS
CDS-auto235182auto235182Theobroma cacaoCDS
CDS-auto235183auto235183Theobroma cacaoCDS
CDS-auto235184auto235184Theobroma cacaoCDS
CDS-auto235185auto235185Theobroma cacaoCDS
CDS-auto235186auto235186Theobroma cacaoCDS
CDS-auto235187auto235187Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t017860.1 ID=Tc04v2_t017860.1|Name=Tc04v2_t017860.1|organism=Theobroma cacao|type=mRNA|length=1299bp
ATGGCACAGATTCTGGCACCCTCAACTCAATGGCAGATGAGACTGCCGAA
GACCTCAACCTATGGAAGTCCCATTGCAACAAAAATGTGGAATTCTCTGG
TATTGAAACAGAACAAGCAAGGAGCAGCTAAAAGCTGTGGCAAATTTAGA
GTGTTTGCCTTGCAGTCTGAGAACAGTACTGTCAACAGGCTAGAGAAGCT
GCTAAACATGGACATCACTCCATACACTGACAAGATCATTGCTGAATATA
TCTGGATAGGAGGCAGTGGAATTGATCTTCGTAGCAAGTCCAAGACAATA
GCAAAGCCAGTTGAACATCCCTCCGAACTTCCCAAGTGGAACTATGATGG
ATCAAGCACTGGGCAAGCACCTGGTGAAGATAGTGAAGTTATTTTATACC
CCCAAGCAATTTTTAAGGACCCTTTCCGGGGAGGCAACAATATCTTGGTA
ATTTGTGATGCATACACACCGGCTGGTGAGCCCATTCCCACAAACAAGCG
CCACAGAGCTGCTGAGATTTTCAGTAACAAGAAGGTGGTAGATAAAGTAC
CATGGTTTGGGATTGAGCAGGAGTATACCTTACTTCAACAAAATGTGAAA
TGGCCTTTGGGTTGGCCTGTTGGTGGCTACCCTGGTCCTCAGGGTCCTTA
TTACTGTGGAGCTGGAGCTGACAAGTCATTCGGGCGTGACATCTCCGATG
CTCATTACAAGGCTTGCTTATATGCCGGCATCAACATTGGTGGCACCAAT
GGGGAGGTTATGCCAGGCCAGTGGGAGTATCAAGTTGGTCCAAGTGTTGG
TATTGAAGCTGGAGATCATATCTGGTGTTCAAGATACATTCTAGAGAGAA
TCACTGAACAAGCTGGTGTTGTTCTCTCTCTTGATCCTAAACCTATAGAG
GGTGACTGGAATGGTGCTGGATGCCACACCAATTACAGTACAAAGAGCAT
GAGGGAAGATGGAGGCTATGAAGTTATAAAGAAAGCAATATTGAATCTAT
CACTCCGTCACCAGGAGCATATTAGTGCCTATGGTGAAGGAAATGAGAGA
AGATTGACAGGAAAGCATGAAACAGCCAGCATTGACACATTCTCTTGGGG
AGTGGCTAACCGTGGTTGCTCAATCCGTGTTGGCCGTGACACTGAGAAGA
ATGGAAAAGGTTACTTGGAAGATCGGCGCCCGGCTTCAAACATGGACCCC
TATGTTGTGACATCATTGTTGGCAGAAACTACAATACTGTATGAGCCAAC
ACTTGAAGCTGAAGCACTTGCTGCCCAGAAGATTGCTTTGAAGGTCTAG
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protein sequence of Tc04v2_p017860.1

>Tc04v2_p017860.1 ID=Tc04v2_p017860.1|Name=Tc04v2_p017860.1|organism=Theobroma cacao|type=polypeptide|length=433bp
MAQILAPSTQWQMRLPKTSTYGSPIATKMWNSLVLKQNKQGAAKSCGKFR
VFALQSENSTVNRLEKLLNMDITPYTDKIIAEYIWIGGSGIDLRSKSKTI
AKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILV
ICDAYTPAGEPIPTNKRHRAAEIFSNKKVVDKVPWFGIEQEYTLLQQNVK
WPLGWPVGGYPGPQGPYYCGAGADKSFGRDISDAHYKACLYAGINIGGTN
GEVMPGQWEYQVGPSVGIEAGDHIWCSRYILERITEQAGVVLSLDPKPIE
GDWNGAGCHTNYSTKSMREDGGYEVIKKAILNLSLRHQEHISAYGEGNER
RLTGKHETASIDTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDP
YVVTSLLAETTILYEPTLEAEALAAQKIALKV*
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