Tc04v2_t016620.3

Overview
NameTc04v2_t016620.3
Unique NameTc04v2_t016620.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length735
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
Productprobable calcium-binding protein CML22, transcript variant X1
NoteProbable calcium-binding protein CML22
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602733
GenbankXM_018120010.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g016620Tc04v2_g016620Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p016620.3Tc04v2_p016620.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto232201auto232201Theobroma cacaoexon
exon-auto232202auto232202Theobroma cacaoexon
exon-auto232203auto232203Theobroma cacaoexon
exon-auto232204auto232204Theobroma cacaoexon
exon-auto232205auto232205Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto232206auto232206Theobroma cacaoCDS
CDS-auto232207auto232207Theobroma cacaoCDS
CDS-auto232208auto232208Theobroma cacaoCDS
CDS-auto232209auto232209Theobroma cacaoCDS
CDS-auto232210auto232210Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t016620.3 ID=Tc04v2_t016620.3|Name=Tc04v2_t016620.3|organism=Theobroma cacao|type=mRNA|length=735bp
ATGGGAAAATGTCGTCCTTGCCCATCCCTGAAGTCTTTGTCCAGCACAAT
AGGAGGCATGCTTTGTCATTGTGGTTCACCAAATAAGTACAAGAAGCTGG
ATTCAAAGCTTGAAAGGAAAATGATTGAAATGAAGAGAAGTGCATCAGGA
CAATCAAATTTCAAATCAATTGACAGCATAATTGTGAGGTTCCCTCAGTT
CAGGGACGGATTGAAAAACCTCAGAGGTGTATTTGAGCAGTATGATGAAG
ACTCTAATGGAACTATTGATCGTGAGGAGCTGAACAAATGTTTGGAAAAA
CTGCAATTTCACCTGACAAAAGAGGAGGTTGAGGATTTGTTTCATTCCTG
TGACATTGATGGGAGTGAAGGGATACAATTTAATGAGTTTATTGTTCTCC
TATGTCTCATCTATCTCCTAATGAAACCTTCCCCATCTCCTGATACTGTA
TCCACAACATTGAAGATAGATTCACCACAGCTTGAGGCCACTTTCGATAC
TATTGTTGAAGCATTCTTGTTTCTTGATAAGAATGGTGATGGAAAATTGA
ACAAGAAAGACATGATCAAGGCACTAAATGAGGCTTCGCCTTGGGAAAGA
TCCCCTGCGCATGTCACCAGGACTAGATTCAAAGAAATGGACTGGGATAA
GAATGGAAAGGTCAGCTTCAGAGAGTTCCTCTTTGCTTTTATCAACTGGG
TTGGGATCGAAAGTGATGAAGAGCTACCTGACTGA
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protein sequence of Tc04v2_p016620.3

>Tc04v2_p016620.3 ID=Tc04v2_p016620.3|Name=Tc04v2_p016620.3|organism=Theobroma cacao|type=polypeptide|length=245bp
MGKCRPCPSLKSLSSTIGGMLCHCGSPNKYKKLDSKLERKMIEMKRSASG
QSNFKSIDSIIVRFPQFRDGLKNLRGVFEQYDEDSNGTIDREELNKCLEK
LQFHLTKEEVEDLFHSCDIDGSEGIQFNEFIVLLCLIYLLMKPSPSPDTV
STTLKIDSPQLEATFDTIVEAFLFLDKNGDGKLNKKDMIKALNEASPWER
SPAHVTRTRFKEMDWDKNGKVSFREFLFAFINWVGIESDEELPD*
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