Tc04v2_t016010.1

Overview
NameTc04v2_t016010.1
Unique NameTc04v2_t016010.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1287
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productphenylalanine--tRNA ligase, chloroplastic/mitochondrial
NotePhenylalanine--tRNA ligase, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602668
GenbankXM_018120192.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g016010Tc04v2_g016010Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p016010.1Tc04v2_p016010.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto230765auto230765Theobroma cacaoexon
exon-auto230766auto230766Theobroma cacaoexon
exon-auto230767auto230767Theobroma cacaoexon
exon-auto230768auto230768Theobroma cacaoexon
exon-auto230769auto230769Theobroma cacaoexon
exon-auto230770auto230770Theobroma cacaoexon
exon-auto230771auto230771Theobroma cacaoexon
exon-auto230772auto230772Theobroma cacaoexon
exon-auto230773auto230773Theobroma cacaoexon
exon-auto230774auto230774Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto230775auto230775Theobroma cacaoCDS
CDS-auto230776auto230776Theobroma cacaoCDS
CDS-auto230777auto230777Theobroma cacaoCDS
CDS-auto230778auto230778Theobroma cacaoCDS
CDS-auto230779auto230779Theobroma cacaoCDS
CDS-auto230780auto230780Theobroma cacaoCDS
CDS-auto230781auto230781Theobroma cacaoCDS
CDS-auto230782auto230782Theobroma cacaoCDS
CDS-auto230783auto230783Theobroma cacaoCDS
CDS-auto230784auto230784Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t016010.1 ID=Tc04v2_t016010.1|Name=Tc04v2_t016010.1|organism=Theobroma cacao|type=mRNA|length=1287bp
ATGGCAGTAGTTTCAAGTGCTCATTCAACTATCTTCTCCAAAACCTCGCT
TTTTCACCACATTAATGGTTTCAAACGCTTCACTTTTTGCTTACCCTTTT
CTACTTCTGCTGCTGTTTCTCTTTCTGCTAAGAAGAAGTGGAGACAACCA
GTGGCTTCTTCAGTGCTAGAGCTTGGTGGAAACAAAATTGCTAAAGATGA
TGTGGTGAGGGATGACCCAACGAACAATGTTCCAGACACGATGTTTTCAA
AACTGGGAATGCAGCTCCACAGAAGGAATAACCACCCTCTTGGGATTTTG
AAGAATGGAATATATGAGTATTTTGATACTAATTACCCAAACATGTTTGA
TAAGTTTGATGATCTCTGCCCAATTGTTTCAGTAAAACAGAATTTTGATG
ATGTCCTGGTGCCTGCTGATCATGTAAGCAGGAGCTATAATGATACATAC
TATGTTGACTCTCAAACTGTGCTGAGGTGTCATACAAGTGCTCATCAAGC
AGAGCTGTTGAGAAGGGGACACACTCATTTCCTTGTAACTGGTGATGTGT
ACCGTAGAGACTCTATTGATTCTACCCATTACCCTGTGTTTCATCAGATG
GAAGGGGTTCGTGTTTTTACTCCTGATAATTGGGAGGCATCAGGTCTGGA
TCCCACATCATATGCAGCTGAGGACTTAAAGAAAAGTCTAGAGGGCCTTG
CTCGTCACTTATTTGGTGCCGTTGAGATGCGTTGGATCGATGCCTATTTT
CCATTTACAAATCCTTCTTATGAACTTGAAATCTATTTTAAGGAAAAATG
GATGGAGGTTTTGGGTTGTGGAGTGATGGAGCAAGAAATATTGAAAAGTA
ATGGTAGATTAAACAGTGTTGCTTGGGCCTTTGGACTTGGATTGGAGCGG
CTTGCAATGGTTTTATTTGACATACCGGATATTCGGCTTTTTTGGTCAAC
TGATGAACGATTTACCTCACAGTTTTCCCAAGGCCAAATGGGAGTGAAGT
TTAAACCCTTTTCAAAGTATCCTCCCTGTTATAAAGACATCAGCTTTTGG
ATCAATGAATCATTTACTGAGAACAATTTATGTGAAGTTATAAGAGGAAT
AGCTGGGGATCTTGTTGAAGAGGTGAGTTTGATAGATAACTTTCCCAACA
AGAAAGGGATGACAAGTCATTGTTACCGGATTACATATCGGTCCATGGAG
CGTTCACTCACAGATGAGGAGATTAATGACCTGCAGTGGAACGTGAGAGA
ACAGGTGCAGAGCAAGTTAAATGTTGTCCTAAGATGA
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protein sequence of Tc04v2_p016010.1

>Tc04v2_p016010.1 ID=Tc04v2_p016010.1|Name=Tc04v2_p016010.1|organism=Theobroma cacao|type=polypeptide|length=429bp
MAVVSSAHSTIFSKTSLFHHINGFKRFTFCLPFSTSAAVSLSAKKKWRQP
VASSVLELGGNKIAKDDVVRDDPTNNVPDTMFSKLGMQLHRRNNHPLGIL
KNGIYEYFDTNYPNMFDKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTY
YVDSQTVLRCHTSAHQAELLRRGHTHFLVTGDVYRRDSIDSTHYPVFHQM
EGVRVFTPDNWEASGLDPTSYAAEDLKKSLEGLARHLFGAVEMRWIDAYF
PFTNPSYELEIYFKEKWMEVLGCGVMEQEILKSNGRLNSVAWAFGLGLER
LAMVLFDIPDIRLFWSTDERFTSQFSQGQMGVKFKPFSKYPPCYKDISFW
INESFTENNLCEVIRGIAGDLVEEVSLIDNFPNKKGMTSHCYRITYRSME
RSLTDEEINDLQWNVREQVQSKLNVVLR*
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