Tc04v2_t015840.1

Overview
NameTc04v2_t015840.1
Unique NameTc04v2_t015840.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1416
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 32 ESTs, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productserine hydroxymethyltransferase 4
NoteSerine hydroxymethyltransferase 4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602644
GenbankXM_007034156.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g015840Tc04v2_g015840Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p015840.1Tc04v2_p015840.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto230284auto230284Theobroma cacaoexon
exon-auto230285auto230285Theobroma cacaoexon
exon-auto230286auto230286Theobroma cacaoexon
exon-auto230287auto230287Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto230288auto230288Theobroma cacaoCDS
CDS-auto230289auto230289Theobroma cacaoCDS
CDS-auto230290auto230290Theobroma cacaoCDS
CDS-auto230291auto230291Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t015840.1 ID=Tc04v2_t015840.1|Name=Tc04v2_t015840.1|organism=Theobroma cacao|type=mRNA|length=1416bp
ATGGATCCAGTGAACGCTTGGGGCAACTCCTCCCTGGAATCCGTCGACCC
TGAGATCCACGACCTCATCGAGAAAGAGAAGCGTCGTCAATGCCGCGGCA
TCGAGCTGATCGCTTCCGAGAACTTTACTTCCTTCGCTGTTATTGAAGCT
CTCGGCAGTGCCCTCACCAACAAGTACTCCGAGGGCATGCCAGGGAACCG
ATACTACGGAGGCAACGAATTCATCGACGAGATCGAGAACCTCTGCAGAG
CTCGCGCTCTGCAGGCTTTCCATCTCGACCCCACCAAGTGGGGTGTCAAT
GTACAGCCTTACTCGGGTTCACCGGCAAACTTTGCCGCTTACACGGCTAT
TCTCCAGCCCCATGATAGGATCATGGGTCTGGATTTACCCTCCGGTGGTC
ACTTGACTCACGGGTATTATACCTCCGGAGGAAAGAAGATTTCTGCAACC
TCCATTTACTTTGAGAGTTTGCCTTACAAGGTGAACTCGAGTACTGGATA
CATTGACTACGATAAGTTGGAAGAGAAGGGCCTGGATTTCAGGCCCAAGC
TTATTATTTGCGGTGGGAGTGCGTATCCTAGGGACTGGGATTACGCCAGG
TTCAGGGCCGTCGCAGACAAGTGTGGTGCTCTGTTGTTGTGTGATATGGC
TCACATTAGTGGACTCGTTGCCGCTCAGGAGGCAGCAAACCCCTTTGAGT
TCTGTGACATAGTCACAACCACCACCCACAAGAGCTTGAGGGGTCCTAGG
GCTGGTATGATCTTCTACCGCAAGGGACCAAAACCACCAAAGAAGGGCCA
GCCAGAAGATGCCGTGTATGACTTTGAAGACAAGATCAACTTTGCAGTTT
TCCCATCCCTTCAGGGTGGTCCCCACAATCACCAAATTGGTGCTCTTGCT
GTTGCCCTAAAACAAGCCATGGCACCTGGGTTTAAGGCTTATGCTAAACA
AGTTAAGGCCAATGCAGTTGCCCTTGGAAACTACCTGATGAGCAAGGGAT
ACAAGCTTGTAACTGGGGGAACTGAGAACCACCTTGTTCTTTGGGATCTG
CGACCTCTTGGATTGACTGGCAACAAGGTTGAGAAGCTTTGTGACCTGTG
CAACATCACTGTCAACAAGAATGCTGTATTTGGTGACAGCAGTGCCTTGG
CCCCTGGAGGAGTGCGAATTGGTACCCCTGCCATGACTTCAAGAGGTTTG
CTTGAGAAGGACTTTGAACAAATAGGAGAGTTCCTCCACCAAGCTGTGAC
CATCACCTTGAACATCCAAAAGCAGTATGGAAAGCTCTTGAAGGACTTCA
ACAAAGGTTTGGTGAACAACAAGGAGATTGAAGAGCTCAAGGCTGATGTT
GAGAAGTTTGCATCCTCCTTTGACATGCCTGGCTTCAAGATGTCCGAAAT
GAAGTACAAGGATTAG
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protein sequence of Tc04v2_p015840.1

>Tc04v2_p015840.1 ID=Tc04v2_p015840.1|Name=Tc04v2_p015840.1|organism=Theobroma cacao|type=polypeptide|length=472bp
MDPVNAWGNSSLESVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEA
LGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRARALQAFHLDPTKWGVN
VQPYSGSPANFAAYTAILQPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT
SIYFESLPYKVNSSTGYIDYDKLEEKGLDFRPKLIICGGSAYPRDWDYAR
FRAVADKCGALLLCDMAHISGLVAAQEAANPFEFCDIVTTTTHKSLRGPR
AGMIFYRKGPKPPKKGQPEDAVYDFEDKINFAVFPSLQGGPHNHQIGALA
VALKQAMAPGFKAYAKQVKANAVALGNYLMSKGYKLVTGGTENHLVLWDL
RPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGL
LEKDFEQIGEFLHQAVTITLNIQKQYGKLLKDFNKGLVNNKEIEELKADV
EKFASSFDMPGFKMSEMKYKD*
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