Tc04v2_t013060.1

Overview
NameTc04v2_t013060.1
Unique NameTc04v2_t013060.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length276
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productsm-like protein LSM36B, transcript variant X1
NoteSm-like protein LSM36B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602318
GenbankXM_007033615.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g013060Tc04v2_g013060Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p013060.1Tc04v2_p013060.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto223436auto223436Theobroma cacaoexon
exon-auto223437auto223437Theobroma cacaoexon
exon-auto223438auto223438Theobroma cacaoexon
exon-auto223439auto223439Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto223440auto223440Theobroma cacaoCDS
CDS-auto223441auto223441Theobroma cacaoCDS
CDS-auto223442auto223442Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t013060.1 ID=Tc04v2_t013060.1|Name=Tc04v2_t013060.1|organism=Theobroma cacao|type=mRNA|length=276bp
ATGAGTGGAGCAGGAGAGAAAGGGTCAACAACTACAAAAACACCGGCAGA
TTTCCTCAAATCAATTCGTGGGCGACCAGTTGTCGTGAAACTGAATTCTG
GTGTTGATTATAGAGGTATTCTAGCATGCCTAGATGGATATATGAATATA
GCCATGGAGCAAACAGAAGAATATGTCAATGGACAGTTAAAAAATAAATA
TGGTGACGCATTTATTCGTGGAAATAATGTTCTTTATATCAGTACATCAA
AGAGGACATTAGCAGATGGGGCTTAG
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protein sequence of Tc04v2_p013060.1

>Tc04v2_p013060.1 ID=Tc04v2_p013060.1|Name=Tc04v2_p013060.1|organism=Theobroma cacao|type=polypeptide|length=92bp
MSGAGEKGSTTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNI
AMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLADGA*
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