Tc04v2_t013010.1

Overview
NameTc04v2_t013010.1
Unique NameTc04v2_t013010.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1302
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productshikimate O-hydroxycinnamoyltransferase, transcript variant X3
NoteShikimate O-hydroxycinnamoyltransferase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602309
GenbankXM_018119906.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g013010Tc04v2_g013010Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p013010.1Tc04v2_p013010.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto223247auto223247Theobroma cacaoexon
exon-auto223248auto223248Theobroma cacaoexon
exon-auto223249auto223249Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto223250auto223250Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t013010.1 ID=Tc04v2_t013010.1|Name=Tc04v2_t013010.1|organism=Theobroma cacao|type=mRNA|length=1302bp
ATGGAGATTTCAATCAAGGAGTCAACAATGGTTCGTCCAGCTCAAGAAAC
TCCAAACCAATGGCTCTGGATGTCTAACATGGATGAGATAGTGATAAGAA
GTCATATCCCCACAGTATATTTCTACATACCAGATGGTTCTTCCAATTGT
TTTGATGTCGAAAGGCTTAAGGGGTCTTTGAGCAGAATTCTTGTTCCATT
CTACCCGGTAGCCGGAAGATTGAGATTCGATGAAAACGAAAGACTTGAGC
TAATTTGCAATGCCGAGGGAGTACTGTTTATTGAGGCTGAAACTTCTTCT
GAGATGGATCTCTTAACTGGCGATTTTACAGATAGCTCACAAGTTTGGCG
ACTAGTTCCAGCAGTGGACTATTCAGGTGGAATATCTTCTTATCCACTTT
TCATATTGCAGGTAACTAGTTTTAAATGCGGAGGAATCAGTATTGGAGTT
GGAGTTCATCATAGTTTAGCAGATGGTACATCTGCTCTTAATTTTATTAA
TAGTTGGTCTGATATGGCACGAGGCATACCCCTCTGCCTTGAACCATTGT
TTGATCGGACCCTTCTCCGAGCTCGAGTGCCACCTACTCCCAAATTTCAC
CATATAGAATATGAACCATCTCCTCCCCTTATCACAGAATCTGAATCACA
TCCTAAATCTTCAATCGTATCTGTTTTTAATATCACAGCTGATCATGTAA
ACACCTTAAAAGCCAAGTCGCAAGAAAATATTGCAGATACTTCTACTACC
AAGTTTAGCACCTTCAATGTCCTCGCTGCACATATATGGCGTTGCGTGAC
CAGAGCTCGATTCCTCTCAAACGATCAGCCAACCAAGTTATACATGGCGG
TTGATGGCCGATCCCGATTGCATCCTGCTCTCCCGTCGGAATACTTTGGC
AATGTAATCTTCACCACTGCAACAATTGCTGTAGCTGGTGATCTTCAATC
GGAACCAATTACAGATACGGAAAAGAGAATCCAAAAAGCATTGACGCAAA
TGGACAATGAATATTTAAGATCAATTCTTGACTACATGGAACTGCCTGGC
GTAAAAGATTTGGCGCGAGGATCACGGACTATCCATTCTCCAAATCTTGG
TATTGTCAGTTGGATGCGGTTGCCTATTTATGAAGCAGATTTTGGATGGG
GTCGTCCTGTATATATGAGGCCGGCGAAGGTTCTGGTCGAAGGATTGGTA
TATATAACTCGGACTCCAAAGAATGATGGGAGCTTATCAGTGGTGACACG
CTTGGAGGCCTCTGAAATGAAACTCTTTGGAGAGCTTCTTTACAAATTCT
AA
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protein sequence of Tc04v2_p013010.1

>Tc04v2_p013010.1 ID=Tc04v2_p013010.1|Name=Tc04v2_p013010.1|organism=Theobroma cacao|type=polypeptide|length=434bp
MEISIKESTMVRPAQETPNQWLWMSNMDEIVIRSHIPTVYFYIPDGSSNC
FDVERLKGSLSRILVPFYPVAGRLRFDENERLELICNAEGVLFIEAETSS
EMDLLTGDFTDSSQVWRLVPAVDYSGGISSYPLFILQVTSFKCGGISIGV
GVHHSLADGTSALNFINSWSDMARGIPLCLEPLFDRTLLRARVPPTPKFH
HIEYEPSPPLITESESHPKSSIVSVFNITADHVNTLKAKSQENIADTSTT
KFSTFNVLAAHIWRCVTRARFLSNDQPTKLYMAVDGRSRLHPALPSEYFG
NVIFTTATIAVAGDLQSEPITDTEKRIQKALTQMDNEYLRSILDYMELPG
VKDLARGSRTIHSPNLGIVSWMRLPIYEADFGWGRPVYMRPAKVLVEGLV
YITRTPKNDGSLSVVTRLEASEMKLFGELLYKF*
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