Tc04v2_t012580.1

Overview
NameTc04v2_t012580.1
Unique NameTc04v2_t012580.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length954
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 130 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Productperoxidase 70
NoteLignin-forming anionic peroxidase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602262
GenbankXM_018120142.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g012580Tc04v2_g012580Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p012580.1Tc04v2_p012580.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto222513auto222513Theobroma cacaoexon
exon-auto222514auto222514Theobroma cacaoexon
exon-auto222515auto222515Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto222516auto222516Theobroma cacaoCDS
CDS-auto222517auto222517Theobroma cacaoCDS
CDS-auto222518auto222518Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t012580.1 ID=Tc04v2_t012580.1|Name=Tc04v2_t012580.1|organism=Theobroma cacao|type=mRNA|length=954bp
ATGGCTTCTCGCGGCTTCATCCTCCTTCAGATCTCTCTGTTGTTGACTGT
TGCAACCACAGCTTTCTCACTGTCTCCGTATTACTATAAAAATATTTGTC
CCGAAGCTTTGCCAACGATCAAGAAATTAGTGGAGGCTGCAGTGTATAAA
GAGCGGCGGATGGGAGCTTCTTTACTTCGTCTTCACTTCCACGACTGCTT
TGTTAATGGATGTGATGCTTCGATTCTTCTGGATCCTACACCCAACATTG
ACAGTGAAAAGAATGCTGTTGCCAATAACAATTCTGCAAGAGGATTTGAA
GTGATCGACCAAATTAAGGCAGAGGTGGACAAGGTTTGCGGACACCCTGT
GGTCTCTTGTGCAGATATCTTAGCCGTGGCAGCTCGAGATTCCGTAGTTG
CACTAGGAGGACCATCATGGAAGGTGCGGCTTGGGAGGAGAGACTCAACC
ACCGCGAGTCGGACACAAGCGAACCTCGACATCCCATCCCCATTCATGGA
CCTCCCTGCATTAATCAACAATTTCAAGAATCAAGGTCTGAACCAGAGAG
ATCTTGTGGCTCTCTCTGGCGGCCACACCATTGGGTTTGCACAATGTTTT
ACCTTTCGTAACAGAATTTATAATGCAACAAACATCGACCCTGCCTTTGC
AAAAGAACGAAGAGTAACCTGCCGACGAACTGGAGAAAACACTAACCTTG
CTCCCCTAGACCCCACACCTGCATTCTTTGACACTGCATACTTCAACAAC
TTGGTGAAGCAGAGGGGGCTACTGATCTCAGATCAGGAACTTTTCAATGG
CGGCTCCACTGATAATCTTGTAAAGACTTACAGCTTGTACCCTGAAGCTT
TTTGGAAGGATTTTGCAAAGTCTATGATTAAGATGGGGAACATTAAGCCT
TTGACTGGGAACCAGGGACAAATTCGTGTCAACTGCAGGAAGGTGAATTA
TTAA
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protein sequence of Tc04v2_p012580.1

>Tc04v2_p012580.1 ID=Tc04v2_p012580.1|Name=Tc04v2_p012580.1|organism=Theobroma cacao|type=polypeptide|length=318bp
MASRGFILLQISLLLTVATTAFSLSPYYYKNICPEALPTIKKLVEAAVYK
ERRMGASLLRLHFHDCFVNGCDASILLDPTPNIDSEKNAVANNNSARGFE
VIDQIKAEVDKVCGHPVVSCADILAVAARDSVVALGGPSWKVRLGRRDST
TASRTQANLDIPSPFMDLPALINNFKNQGLNQRDLVALSGGHTIGFAQCF
TFRNRIYNATNIDPAFAKERRVTCRRTGENTNLAPLDPTPAFFDTAYFNN
LVKQRGLLISDQELFNGGSTDNLVKTYSLYPEAFWKDFAKSMIKMGNIKP
LTGNQGQIRVNCRKVNY*
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