Tc04v2_t012040.1

Overview
NameTc04v2_t012040.1
Unique NameTc04v2_t012040.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1467
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productserine/threonine-protein kinase AtPK2/AtPK19, transcript variant X1
NoteSerine/threonine-protein kinase AtPK2/AtPK19
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602199
GenbankXM_007033435.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g012040Tc04v2_g012040Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p012040.1Tc04v2_p012040.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto221827auto221827Theobroma cacaoexon
exon-auto221828auto221828Theobroma cacaoexon
exon-auto221829auto221829Theobroma cacaoexon
exon-auto221830auto221830Theobroma cacaoexon
exon-auto221831auto221831Theobroma cacaoexon
exon-auto221832auto221832Theobroma cacaoexon
exon-auto221833auto221833Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto221834auto221834Theobroma cacaoCDS
CDS-auto221835auto221835Theobroma cacaoCDS
CDS-auto221836auto221836Theobroma cacaoCDS
CDS-auto221837auto221837Theobroma cacaoCDS
CDS-auto221838auto221838Theobroma cacaoCDS
CDS-auto221839auto221839Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t012040.1 ID=Tc04v2_t012040.1|Name=Tc04v2_t012040.1|organism=Theobroma cacao|type=mRNA|length=1467bp
ATGGTTTCCTCACAGTTAACTGGTTTGACCAAGGCTGGAACATGTAAACC
TGTTGATGCTCAGTTACTGTTTCCTGTAAGTCCCCTGGAAGCTGTTGTGC
CTGATCAGGTTGAGTTAGATTTTTCTGATGTTTTCGGCCCCCCGCCAGTT
CAGGCCTCAATAGATGTCAGTTGTGGTGAACTAGACAATACTCTTTCTGC
TGCAGTTGTGACTGCACTTGTTTATGATGAACCAGCTATTGTTTACAACC
GATCACATTCTTTGCGTGGCCCCTCTTCTTGTGTTGGTCAATGCTTGAAC
CTAAGCAAACTCACTTTAAGTGAGACAGGGGATTCTGGGCATATGGTAGG
GTGTGTTAAGGGAGAAACTATCAGTGAAGTTGAGGAGCAATCTCTTGGAG
ATGGTGATGATAAGAAGTTTGTTGAAGATGTTAATGGAGATCACATGAAG
GTCCGCAGCATAGACATTGAGGATTTTGAGGTTTTGAAGGTTGTTGGGCA
GGGTGCATTTGGAAAAGTATATCAGGTAAGGAAAAAGGGCACACCAGAAA
TTTATGCAATGAAGGTCATGCGGAAGGACAAGATAATGGAGAAGAATCAT
GCAGAGTACATGAAAGCTGAGAGGGATATTTTAACAAAAGTTGATCATCC
TTTCGTTGTCCAGCTCAAATACTCATTCCAAACCAAATATAGGTTGTACC
TTGTTCTGGATTTCATTAATGGGGGGCACCTTTTCTTTCAGCTTTACCAC
CATGGTCTTTTCAGAGAGGACCTGGCTCGTGTCTACACTGCTGAGATTGT
TTCTGCGGTTTCACACCTTCATGCAAATGGCATAATGCACAGGGATCTTA
AACCTGAAAATATTCTTTTGGATGCTGATGGCCATGTAATGTTGACTGAT
TTTGGCCTGGCTAAGCAATTTGACGAAAATACGAGATCAAACTCATTTTG
TGGAACACTGGAATACATGTCACCTGAAATAATTGCTGGGAAGGGCCATG
ATAAGGCTGCAGACTGGTGGAGTGTTGGGATTTTATTATATGAAATGCTT
ACAGGAAAGCCTCCTTTTATTGGTGGAAATAGGGAAAAAGTACAGCAGAA
GATTGTTAAGGAGAGGATCAAGCTGCCCAGCTTCCTTACTGGTGAAGCAC
ATTCTCTGTTGAAAGGGCTGCTACATAAAGATGCCAGCAAGCGCCTTGGG
AGTGGACCAACTGGAAGCGAGGAAATTAAGCGACACAAGTGGTTCAAGCC
AATCAACTGGAAGAAACTAGAGGCCAGGGAAATCCAACCCTGTTTTCGTC
CTGAAGTTGCTGGGAAGCATTGCATCGCCAACTTTGACAAGCGATGGACT
GACATGTCATTGTCGTTTTCCCCAGCTTCTAGCCCAAAAACCAATGTAAA
CCCTTTCACCGATTTCACCTACATAAGGCCTATAACCCCTTGTCGTCAGA
GTAGTGCCTTGCGTTAG
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protein sequence of Tc04v2_p012040.1

>Tc04v2_p012040.1 ID=Tc04v2_p012040.1|Name=Tc04v2_p012040.1|organism=Theobroma cacao|type=polypeptide|length=489bp
MVSSQLTGLTKAGTCKPVDAQLLFPVSPLEAVVPDQVELDFSDVFGPPPV
QASIDVSCGELDNTLSAAVVTALVYDEPAIVYNRSHSLRGPSSCVGQCLN
LSKLTLSETGDSGHMVGCVKGETISEVEEQSLGDGDDKKFVEDVNGDHMK
VRSIDIEDFEVLKVVGQGAFGKVYQVRKKGTPEIYAMKVMRKDKIMEKNH
AEYMKAERDILTKVDHPFVVQLKYSFQTKYRLYLVLDFINGGHLFFQLYH
HGLFREDLARVYTAEIVSAVSHLHANGIMHRDLKPENILLDADGHVMLTD
FGLAKQFDENTRSNSFCGTLEYMSPEIIAGKGHDKAADWWSVGILLYEML
TGKPPFIGGNREKVQQKIVKERIKLPSFLTGEAHSLLKGLLHKDASKRLG
SGPTGSEEIKRHKWFKPINWKKLEAREIQPCFRPEVAGKHCIANFDKRWT
DMSLSFSPASSPKTNVNPFTDFTYIRPITPCRQSSALR*
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