Tc04v2_t011740.4

Overview
NameTc04v2_t011740.4
Unique NameTc04v2_t011740.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length786
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Productprotein TIFY 6A, transcript variant X4
NotePutative Protein TIFY 6A
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602164
GenbankXM_007033380.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g011740Tc04v2_g011740Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p011740.4Tc04v2_p011740.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto221011auto221011Theobroma cacaoexon
exon-auto221012auto221012Theobroma cacaoexon
exon-auto221013auto221013Theobroma cacaoexon
exon-auto221014auto221014Theobroma cacaoexon
exon-auto221015auto221015Theobroma cacaoexon
exon-auto221016auto221016Theobroma cacaoexon
exon-auto221017auto221017Theobroma cacaoexon
exon-auto221018auto221018Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto221019auto221019Theobroma cacaoCDS
CDS-auto221020auto221020Theobroma cacaoCDS
CDS-auto221021auto221021Theobroma cacaoCDS
CDS-auto221022auto221022Theobroma cacaoCDS
CDS-auto221023auto221023Theobroma cacaoCDS
CDS-auto221024auto221024Theobroma cacaoCDS
CDS-auto221025auto221025Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t011740.4 ID=Tc04v2_t011740.4|Name=Tc04v2_t011740.4|organism=Theobroma cacao|type=mRNA|length=786bp
ATGGAGAGAGATTTTCTGGGTTTGAAAAGGAAAGACTCATCCGGAACTCT
TACAGAGATTGCCAGCAATAATATATTCAATGATTCGGTTGGCGGCATGC
AACGGTGGTGGTCGGAAGACTCTTCTTGGTCCCAATTTCAGCCTTTCGGA
GCTACTCAAGACGATATGCCAGACACCCTCGCTTCTCCGGTCTATGCTTT
TGATTTTACTTGTAACCCTCTTTCTACTTTGCCTAAGAGGAGCTTCAATA
GTACTACACCATGGAAATTCCCTTTTCAGGAAGAAACAATTCCGACCAGT
AAGCAGTTTCTTGGAGGATTTCCATTTGCGGAACGGTCTGCGACATCAAG
TCCAACTGACCCAAGGAACAAATCCAAGCAAGTCGAGGCAGCTGATGATC
GGTTAACCATCGTTTACGATAATAAAGTCCATGTCTTTGAGGATGTTTCG
CCCAATAAGGCTGAGGCCATACTGCGTTTGGCCAGAGATGAGTACTACTC
ATTCTTGACGGCTGACGATGATCGGAATCAAGTAGTACTGCCGGAGCAAA
CAACGATGGACCTTCTCTGCTGGACCAGCAATGGTAACCAACATGCACTT
GACCCTCCTTCAATCATCAATTCCTCAGCGGAATTCGCCTCGCACACTTA
TTCAGCAATAACTCTGCCTCAGGCTCGCAAAGCAACCTTGGAACATTTTC
TGGAGAAGCGCAAGGACCGATTGACCAACGGTATGTTTTACAAGTTCATG
AAGACGGTGCTTTATAGTCCCGAGTTGCTGAGATGA
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protein sequence of Tc04v2_p011740.4

>Tc04v2_p011740.4 ID=Tc04v2_p011740.4|Name=Tc04v2_p011740.4|organism=Theobroma cacao|type=polypeptide|length=262bp
MERDFLGLKRKDSSGTLTEIASNNIFNDSVGGMQRWWSEDSSWSQFQPFG
ATQDDMPDTLASPVYAFDFTCNPLSTLPKRSFNSTTPWKFPFQEETIPTS
KQFLGGFPFAERSATSSPTDPRNKSKQVEAADDRLTIVYDNKVHVFEDVS
PNKAEAILRLARDEYYSFLTADDDRNQVVLPEQTTMDLLCWTSNGNQHAL
DPPSIINSSAEFASHTYSAITLPQARKATLEHFLEKRKDRLTNGMFYKFM
KTVLYSPELLR*
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