Tc04v2_t011740.1

Overview
NameTc04v2_t011740.1
Unique NameTc04v2_t011740.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length873
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productprotein TIFY 6A, transcript variant X2
NotePutative Protein TIFY 6A
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602164
GenbankXM_018119207.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g011740Tc04v2_g011740Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p011740.1Tc04v2_p011740.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto220957auto220957Theobroma cacaoexon
exon-auto220958auto220958Theobroma cacaoexon
exon-auto220959auto220959Theobroma cacaoexon
exon-auto220960auto220960Theobroma cacaoexon
exon-auto220961auto220961Theobroma cacaoexon
exon-auto220962auto220962Theobroma cacaoexon
exon-auto220963auto220963Theobroma cacaoexon
exon-auto220964auto220964Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto220965auto220965Theobroma cacaoCDS
CDS-auto220966auto220966Theobroma cacaoCDS
CDS-auto220967auto220967Theobroma cacaoCDS
CDS-auto220968auto220968Theobroma cacaoCDS
CDS-auto220969auto220969Theobroma cacaoCDS
CDS-auto220970auto220970Theobroma cacaoCDS
CDS-auto220971auto220971Theobroma cacaoCDS
CDS-auto220972auto220972Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t011740.1 ID=Tc04v2_t011740.1|Name=Tc04v2_t011740.1|organism=Theobroma cacao|type=mRNA|length=873bp
ATGGCGTCATATGTCACATGTCCATTTTTAATTGAGAAAAGAAAGAGAAA
AGAAAAAGGAACATCTCTACTGGCTACTACAACAGCACAACTCCTCCTGA
ATTCAAAACCCCAACAAAAGGACTCTGCAATGGAGAGAGATTTTCTGGGT
TTGAAAAGGAAAGACTCATCCGGAACTCTTACAGAGATTGCCAGCAATAA
TATATTCAATGATTCGGTTGGCGGCATGCAACGGTGGTGGTCGGAAGACT
CTTCTTGGTCCCAATTTCAGCCTTTCGGAGCTACTCAAGACGATATGCCA
GACACCCTCGCTTCTCCGGTCTATGCTTTTGATTTTACTTGTAACCCTCT
TTCTACTTTGCCTAAGGAAGAAACAATTCCGACCAGTAAGCAGTTTCTTG
GAGGATTTCCATTTGCGGAACGGTCTGCGACATCAAGTCCAACTGACCCA
AGGAACAAATCCAAGCAAGTCGAGGCAGCTGATGATCGGTTAACCATCGT
TTACGATAATAAAGTCCATGTCTTTGAGGATGTTTCGCCCAATAAGGCTG
AGGCCATACTGCGTTTGGCCAGAGATGAGTACTACTCATTCTTGACGGCT
GACGATGATCGGAATCAAGTAGTACTGCCGGAGCAAACAACGATGGACCT
TCTCTGCTGGACCAGCAATGGTAACCAACATGCACTTGACCCTCCTTCAA
TCATCAATTCCTCAGCGGAATTCGCCTCGCACACTTATTCAGCAATAACT
CTGCCTCAGGCTCGCAAAGCAACCTTGGAACATTTTCTGGAGAAGCGCAA
GGACCGATTGACCAACGGTATGTTTTACAAGTTCATGAAGACGGTGCTTT
ATAGTCCCGAGTTGCTGAGATGA
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protein sequence of Tc04v2_p011740.1

>Tc04v2_p011740.1 ID=Tc04v2_p011740.1|Name=Tc04v2_p011740.1|organism=Theobroma cacao|type=polypeptide|length=291bp
MASYVTCPFLIEKRKRKEKGTSLLATTTAQLLLNSKPQQKDSAMERDFLG
LKRKDSSGTLTEIASNNIFNDSVGGMQRWWSEDSSWSQFQPFGATQDDMP
DTLASPVYAFDFTCNPLSTLPKEETIPTSKQFLGGFPFAERSATSSPTDP
RNKSKQVEAADDRLTIVYDNKVHVFEDVSPNKAEAILRLARDEYYSFLTA
DDDRNQVVLPEQTTMDLLCWTSNGNQHALDPPSIINSSAEFASHTYSAIT
LPQARKATLEHFLEKRKDRLTNGMFYKFMKTVLYSPELLR*
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