Tc04v2_t011700.8

Overview
NameTc04v2_t011700.8
Unique NameTc04v2_t011700.8
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length717
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productribosomal RNA-processing protein 7 homolog A, transcript variant X7
NoteUncharacterized protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602160
GenbankXM_018119215.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g011700Tc04v2_g011700Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p011700.8Tc04v2_p011700.8Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto220876auto220876Theobroma cacaoexon
exon-auto220877auto220877Theobroma cacaoexon
exon-auto220878auto220878Theobroma cacaoexon
exon-auto220879auto220879Theobroma cacaoexon
exon-auto220880auto220880Theobroma cacaoexon
exon-auto220881auto220881Theobroma cacaoexon
exon-auto220882auto220882Theobroma cacaoexon
exon-auto220883auto220883Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto220884auto220884Theobroma cacaoCDS
CDS-auto220885auto220885Theobroma cacaoCDS
CDS-auto220886auto220886Theobroma cacaoCDS
CDS-auto220887auto220887Theobroma cacaoCDS
CDS-auto220888auto220888Theobroma cacaoCDS
CDS-auto220889auto220889Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t011700.8 ID=Tc04v2_t011700.8|Name=Tc04v2_t011700.8|organism=Theobroma cacao|type=mRNA|length=717bp
ATGAAGAAGAAGAGAAGTAGGGAGAAGGTGGCCAATTTGGTTGAAACCAA
AGAAGAAAAGAAAAGGGATAAATCAAGCAAGAAGAAAAGAAAAAGTAAGG
AGAAAAATAATGCCATCATTGGAATTGTTGATCAGCTCGGTGATGAGGAA
GAAGACCATTTCCAGAAACAAAATGGCAAATTTAAGAAGGATAGAAAAAA
GAAAAAGAAGGAACACAGCTCATCAGGGGAGAATCAACTGTTGGTGGAAA
AGAGTAAAGCAGCTGATAAAGATGAAGTATATGAAATACCTTCAGGGGAT
GAAGACTGCTCACAAGGAATGAAAAAATGGGTTATCGAGTACCACCAAAG
TAGGCCTGGCTTGAAGGTTTTGCAACAAAGAATTGATGAGTTTATAATTG
CCCATGAGGCAAAACTTGAACAGGAAAGAAAAGAAAGAGAAGCTTGTCTT
ACAGAAGGGGGATGGACACTTGTTGAACATCATAAAGGAAGGAAAAAGAC
AACAGAATTTGAAAGTGGAACTACAGTGGGTTCTGTTTCCCAGGCTGCTG
TGGAGGGGAAATTAGCTAAGAAGAAGAGCAAAGAGGTCTTTGATTTCTAT
CGGTTTCAAAAAAGAGAAGCCAAGAGGAATGAACTTATGATGCTCCAGAG
CAGATTTGAGCAGGATAAAAAGCGTATCCAACAGTTGAGGGCTGCTAGGA
AGTTTCGACCTTACTGA
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protein sequence of Tc04v2_p011700.8

>Tc04v2_p011700.8 ID=Tc04v2_p011700.8|Name=Tc04v2_p011700.8|organism=Theobroma cacao|type=polypeptide|length=239bp
MKKKRSREKVANLVETKEEKKRDKSSKKKRKSKEKNNAIIGIVDQLGDEE
EDHFQKQNGKFKKDRKKKKKEHSSSGENQLLVEKSKAADKDEVYEIPSGD
EDCSQGMKKWVIEYHQSRPGLKVLQQRIDEFIIAHEAKLEQERKEREACL
TEGGWTLVEHHKGRKKTTEFESGTTVGSVSQAAVEGKLAKKKSKEVFDFY
RFQKREAKRNELMMLQSRFEQDKKRIQQLRAARKFRPY*
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