Tc04v2_t011700.1

Overview
NameTc04v2_t011700.1
Unique NameTc04v2_t011700.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length747
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Productribosomal RNA-processing protein 7 homolog A, transcript variant X1
NoteUncharacterized protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602160
GenbankXM_018119211.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g011700Tc04v2_g011700Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p011700.1Tc04v2_p011700.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto220768auto220768Theobroma cacaoexon
exon-auto220769auto220769Theobroma cacaoexon
exon-auto220770auto220770Theobroma cacaoexon
exon-auto220771auto220771Theobroma cacaoexon
exon-auto220772auto220772Theobroma cacaoexon
exon-auto220773auto220773Theobroma cacaoexon
exon-auto220774auto220774Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto220775auto220775Theobroma cacaoCDS
CDS-auto220776auto220776Theobroma cacaoCDS
CDS-auto220777auto220777Theobroma cacaoCDS
CDS-auto220778auto220778Theobroma cacaoCDS
CDS-auto220779auto220779Theobroma cacaoCDS
CDS-auto220780auto220780Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t011700.1 ID=Tc04v2_t011700.1|Name=Tc04v2_t011700.1|organism=Theobroma cacao|type=mRNA|length=747bp
ATGAAGAAGAAGAGAAGTAGGGAGAAGGGTAAATGCCAATGGAAATTCTT
AAGACGTGTGGCCAATTTGGTTGAAACCAAAGAAGAAAAGAAAAGGGATA
AATCAAGCAAGAAGAAAAGAAAAAGTAAGGAGAAAAATAATGCCATCATT
GGAATTGTTGATCAGCTCGGTGATGAGGAAGAAGACCATTTCCAGAAACA
AAATGGCAAATTTAAGAAGGATAGAAAAAAGAAAAAGAAGGAACACAGCT
CATCAGGGGAGAATCAACTGTTGGTGGAAAAGAGTAAAGCAGCTGATAAA
GATGAAGTATATGAAATACCTTCAGGGGATGAAGACTGCTCACAAGGAAT
GAAAAAATGGGTTATCGAGTACCACCAAAGTAGGCCTGGCTTGAAGGTTT
TGCAACAAAGAATTGATGAGTTTATAATTGCCCATGAGGCAAAACTTGAA
CAGGAAAGAAAAGAAAGAGAAGCTTGTCTTACAGAAGGGGGATGGACACT
TGTTGAACATCATAAAGGAAGGAAAAAGACAACAGAATTTGAAAGTGGAA
CTACAGTGGGTTCTGTTTCCCAGGCTGCTGTGGAGGGGAAATTAGCTAAG
AAGAAGAGCAAAGAGGTCTTTGATTTCTATCGGTTTCAAAAAAGAGAAGC
CAAGAGGAATGAACTTATGATGCTCCAGAGCAGATTTGAGCAGGATAAAA
AGCGTATCCAACAGTTGAGGGCTGCTAGGAAGTTTCGACCTTACTGA
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protein sequence of Tc04v2_p011700.1

>Tc04v2_p011700.1 ID=Tc04v2_p011700.1|Name=Tc04v2_p011700.1|organism=Theobroma cacao|type=polypeptide|length=249bp
MKKKRSREKGKCQWKFLRRVANLVETKEEKKRDKSSKKKRKSKEKNNAII
GIVDQLGDEEEDHFQKQNGKFKKDRKKKKKEHSSSGENQLLVEKSKAADK
DEVYEIPSGDEDCSQGMKKWVIEYHQSRPGLKVLQQRIDEFIIAHEAKLE
QERKEREACLTEGGWTLVEHHKGRKKTTEFESGTTVGSVSQAAVEGKLAK
KKSKEVFDFYRFQKREAKRNELMMLQSRFEQDKKRIQQLRAARKFRPY*
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