Tc04v2_t011350.1

Overview
NameTc04v2_t011350.1
Unique NameTc04v2_t011350.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length909
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Productmetalloendoproteinase 1
NotePutative Metalloendoproteinase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602105
GenbankXM_018119263.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g011350Tc04v2_g011350Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p011350.1Tc04v2_p011350.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto220213auto220213Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto220214auto220214Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t011350.1 ID=Tc04v2_t011350.1|Name=Tc04v2_t011350.1|organism=Theobroma cacao|type=mRNA|length=909bp
ATGGCACCAAAACTTTCTCATCAGGTTTTTGAAGCTATCTTTCTCTTCCT
CGTTCTGCAACCTTTTGTAGTTAAGTCTAGACCTCTAGAACCCGAATCCC
TTCGGAATCTTGAACGAGCTCAGAAAGGAGATACTCTCAATGGGCTTAGC
CATGTCAAGAAGTACCTTAGGGCCTATGGTTACTACCCCAATGACTTCAA
TCTTATTGACGATCATTTTGACGACTCTTTAGAGTCTGCCCTTAAAGCAT
ATCAACAAAATTATTATCTCAAAGTAACAGGCAAGATTGACCCTGATACA
ATTAAAGCAATGAGGACCCCTAGATGTGGTGTCCCTGATATCATCTCTAA
CAGAACTTCTAATGACACTGGGGGAAAGCCTCATGGCGTCATATTTCACT
TGGTTTCTAACTATTCCTTTTTCCCTGGAAATCCTAGATGGAGCAGGTAC
CAACTTACCTACAATTTCCTACCCGGTGTCCAGGTAGTTAGCTCACAAGT
ACTAAGACCTATCATTGCCCGGGCATTCCAGACATGGGCAGCTGTTTCTC
CATTCAGATTCCAGGAGGTAGCACAAGGCAACCGAGCAGATATCAGGATC
GGGTTTTACAGATATGAACATGGGGATGGCTATCCTTTTGATGGCCCTGG
AAACATTTTGGCTCATGCTTTTGCACCACAAGATGGGAGATTTCACTATG
ATGCAGACGAGAATTGGAGCCCTAATCCTACTGCTCCTAACCAAATAGAC
CTGGAAACGGTAGCTGTGCATGAAATAGGACATAATCTCGGCCTTGGTCA
CAGTCAGGATCAAGCTGCCATCATGTTTCCATCTATACCAGCTGGAGCTA
CCAAAAGGAACTTAGGCCAAGATGACATTGTTGGTCTACGAGCTCTGTAT
GGCTATTAG
back to top

protein sequence of Tc04v2_p011350.1

>Tc04v2_p011350.1 ID=Tc04v2_p011350.1|Name=Tc04v2_p011350.1|organism=Theobroma cacao|type=polypeptide|length=303bp
MAPKLSHQVFEAIFLFLVLQPFVVKSRPLEPESLRNLERAQKGDTLNGLS
HVKKYLRAYGYYPNDFNLIDDHFDDSLESALKAYQQNYYLKVTGKIDPDT
IKAMRTPRCGVPDIISNRTSNDTGGKPHGVIFHLVSNYSFFPGNPRWSRY
QLTYNFLPGVQVVSSQVLRPIIARAFQTWAAVSPFRFQEVAQGNRADIRI
GFYRYEHGDGYPFDGPGNILAHAFAPQDGRFHYDADENWSPNPTAPNQID
LETVAVHEIGHNLGLGHSQDQAAIMFPSIPAGATKRNLGQDDIVGLRALY
GY*
back to top