Tc04v2_t011000.1

Overview
NameTc04v2_t011000.1
Unique NameTc04v2_t011000.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1557
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 15 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productcytokinin hydroxylase
NoteCytokinin hydroxylase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602063
GenbankXM_018118815.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g011000Tc04v2_g011000Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p011000.1Tc04v2_p011000.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto219342auto219342Theobroma cacaoexon
exon-auto219343auto219343Theobroma cacaoexon
exon-auto219344auto219344Theobroma cacaoexon
exon-auto219345auto219345Theobroma cacaoexon
exon-auto219346auto219346Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto219347auto219347Theobroma cacaoCDS
CDS-auto219348auto219348Theobroma cacaoCDS
CDS-auto219349auto219349Theobroma cacaoCDS
CDS-auto219350auto219350Theobroma cacaoCDS
CDS-auto219351auto219351Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t011000.1 ID=Tc04v2_t011000.1|Name=Tc04v2_t011000.1|organism=Theobroma cacao|type=mRNA|length=1557bp
ATGGCTGCTGTGGTGGTGTTTTTAATGACCCTTTTGGTTCTATTTATTTC
CTTGGTGCTTAAAGTTGTGCTTGACACAATCTCATGTTACATGCTGAATC
CTAGACGCATCAGGAAAATCATGGCGAAACAAGGAGTGCGTGGCCCCAAA
CCCCGGGGAATTACTGGCAACATGATCGAAATGTTCAATCTAACGACCCA
ATCCACCTCAAAAGACATGGTTAGCATCGACCATGACATCGTTGGCCGGC
TTCTACCGCATTATGTCAACTGGTCTAAATCATATGGGAAAAGATTTATA
TATTGGCATGGGATTGAGCCAAGGATGTGCCTGACAGAGACTGAATTGAT
CAAAGAACTCATGACCAAGTTCCCCCTTGTAACGGGCAAATCATGGCTGC
AACAGCAGGGCTCAAAACATTTTACGGGGAGAGGTTTGTTAATGGCGAAC
GGGCAGGATTGGTACCACCAGCGTCATATAGCTGCTCCAGCATTCATGGG
GGATAAGCTTAAGAGTTATGCTGGGCACATGGTGGAATGCACTAAGCATA
CGCTCCAATTACTGCAAAATGCAGTAGAATCAGGCCAGAGAGAGTTTGAA
ATTGGAGAATACATGGCTAGACTTACTGCAGATATAATTGCAAGAACCGA
ATTCGATAGCAGTTACGAGAAAGGAAAGCAAATATTCCATCTTTTAACAT
CTCTGCAACACCTTTGCGCTCAAGCAAGCAGGCACCTGTGCTTTCCAGGA
AGCCGGTTCTTCCCAACCAAATATAACAGAGAAATAAAGTCCCTGAAGAT
GGAGGTAGATAGATTGCTATTGGAGATTATACAAAGCCGAAGAGATTGTG
TAGAGATCGGTCGGAGCAGTTCATATGGGAATGATTTATTAGGTATGCTG
CTTAATGAAATGGAAAAGAAGAGAAGTGACAAATTTAGCCTAAACCTGCA
GCTGATCATGGATGAATGCAAAACTTTCTTTTTCGCCGGCCATGAAACTA
CGGCCCTGTTACTTACCTGGACTGTCATGTTACTAGCCAGCAACCCTGCT
TGGCAGGAAAAAGTTCGAGCTGAGGTCAAACAGGGCTGCAATGGTGGGGT
TCCCTCTGTTGATCAACTCTCAAAACTAACTTTGCTACACATGGTTATAA
ATGAATCATTGAGACTATATCCACCAGCTACAGTCCTGCCCCGGATGGCT
TTCGAAGACATAAAGTTAGGTGACCTCTTCATCCCTAAGGGACTATCAAT
ATGGATACCGGTGCTGGCAATACATCATAGTGAAGAATTATGGGGAAAGG
ATGTAAATGAGTTCAAACCTGAGAGGTTTAATTCAAGACCATTTGCCTCT
GGTCGGCATTTCATACCATTTGCTGCAGGCCCTCGGAATTGCGTTGGCCA
ATCTTTTGCTGTGATGGAAGCTAAGATTATATTAGCCATGTTGATTTCAA
GGTTTAGCTTCACAATTTCGGAAAGTTATCGCCATGCTCCGGTCGTTGTC
ATGACTATAAAGCCGAAATATGGAGTACAAGTGCATTTGAAGCCATTGGA
TCCTTGA
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protein sequence of Tc04v2_p011000.1

>Tc04v2_p011000.1 ID=Tc04v2_p011000.1|Name=Tc04v2_p011000.1|organism=Theobroma cacao|type=polypeptide|length=519bp
MAAVVVFLMTLLVLFISLVLKVVLDTISCYMLNPRRIRKIMAKQGVRGPK
PRGITGNMIEMFNLTTQSTSKDMVSIDHDIVGRLLPHYVNWSKSYGKRFI
YWHGIEPRMCLTETELIKELMTKFPLVTGKSWLQQQGSKHFTGRGLLMAN
GQDWYHQRHIAAPAFMGDKLKSYAGHMVECTKHTLQLLQNAVESGQREFE
IGEYMARLTADIIARTEFDSSYEKGKQIFHLLTSLQHLCAQASRHLCFPG
SRFFPTKYNREIKSLKMEVDRLLLEIIQSRRDCVEIGRSSSYGNDLLGML
LNEMEKKRSDKFSLNLQLIMDECKTFFFAGHETTALLLTWTVMLLASNPA
WQEKVRAEVKQGCNGGVPSVDQLSKLTLLHMVINESLRLYPPATVLPRMA
FEDIKLGDLFIPKGLSIWIPVLAIHHSEELWGKDVNEFKPERFNSRPFAS
GRHFIPFAAGPRNCVGQSFAVMEAKIILAMLISRFSFTISESYRHAPVVV
MTIKPKYGVQVHLKPLDP*
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