Tc04v2_t009960.3

Overview
NameTc04v2_t009960.3
Unique NameTc04v2_t009960.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1068
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productpyridoxal kinase, transcript variant X2
NotePyridoxal kinase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601927
GenbankXM_018120286.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g009960Tc04v2_g009960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p009960.3Tc04v2_p009960.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto217381auto217381Theobroma cacaoexon
exon-auto217382auto217382Theobroma cacaoexon
exon-auto217383auto217383Theobroma cacaoexon
exon-auto217384auto217384Theobroma cacaoexon
exon-auto217385auto217385Theobroma cacaoexon
exon-auto217386auto217386Theobroma cacaoexon
exon-auto217387auto217387Theobroma cacaoexon
exon-auto217388auto217388Theobroma cacaoexon
exon-auto217389auto217389Theobroma cacaoexon
exon-auto217390auto217390Theobroma cacaoexon
exon-auto217391auto217391Theobroma cacaoexon
exon-auto217392auto217392Theobroma cacaoexon
exon-auto217393auto217393Theobroma cacaoexon
exon-auto217394auto217394Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto217395auto217395Theobroma cacaoCDS
CDS-auto217396auto217396Theobroma cacaoCDS
CDS-auto217397auto217397Theobroma cacaoCDS
CDS-auto217398auto217398Theobroma cacaoCDS
CDS-auto217399auto217399Theobroma cacaoCDS
CDS-auto217400auto217400Theobroma cacaoCDS
CDS-auto217401auto217401Theobroma cacaoCDS
CDS-auto217402auto217402Theobroma cacaoCDS
CDS-auto217403auto217403Theobroma cacaoCDS
CDS-auto217404auto217404Theobroma cacaoCDS
CDS-auto217405auto217405Theobroma cacaoCDS
CDS-auto217406auto217406Theobroma cacaoCDS
CDS-auto217407auto217407Theobroma cacaoCDS
CDS-auto217408auto217408Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t009960.3 ID=Tc04v2_t009960.3|Name=Tc04v2_t009960.3|organism=Theobroma cacao|type=mRNA|length=1068bp
ATGCTGCTTTGCTCTTCAGTCAGCGGCCGTTCTTCGCAATCGGGCATTTT
CCGAGATAAAACTATTAGTTCTTTTTCCCTTTCTCGAAGTTGGAGGAAGT
CGGTAATGGCGTCACCTCCGATCTTATCCTTGGCTCTTCCTTCGGATACT
GGTCGAGTTCTCAGCATTCAGTCTCACACAGTTCAGGGATATGTTGGTAA
TAAGTCAGCAGTCTTTCCTCTCCAACTACTTGGCTATGATGTGGACCCAA
TCAATTCAGTACAGTTTTCAAATCACACAGGATACCCAACATTTAAGGGT
CACGTTTTGAATGGACAACAATTGTGGGATTTAATAGAAGGCCTTGAAGC
AAATGATTTATTATACTATACTCATTTATTAACAGGTTATATTGGTTCTG
TTTCTTTTTTGAACAAAGTATTGGAGGTTGTACATCAGCTTCGCTGTGTA
AATCCAAATCTTACTTATGTTTGTGATCCAGTGATGGGTGACGAAGGAAA
GCTCTATGTCCCTGAAGATCTGGTATCAGTATATCGGGAAAAGGTTGTCC
CAGTGGCTTCGATGTTGACTCCTAACCAGTTTGAAGCAGAGTTGTTGACT
AAATTAAGGATTGGTTCAGAAACGGATGGTCGGGAAGCTTGTAACATTCT
TCATGCTACTGGGCCTTCAAAGGTTGTGATTACTAGCATCAATATAGAAG
GCAATCTTCTTCTCATTGGTAGTCATCAGAAAGATAAGGAACACGCTCCT
GAGCAATTCAAGATTGTGATACCCAAAATTCCTGCATATTTTACGATGAT
GAAGTTTCAAACATATTGTTTGCTCAAGGGAACAGGAGATCTAATGACTG
CACTTCTTCTTGGGTGGAGTAATAAATATCCCAACAACCTTGACAAGGCA
GCAGAGCTAGCAGTATCAAGTTTGCAGGCACTTTTGCAGAGGACGTTGAG
TGACTATAGGAGAGCTGGATTTGATTCTCAATCAAGCAGTTTAGAGATCC
GGCTGATTCAGAGCCAGGATGACATCCGCAACCCAAAATTGACATTCAAA
GCTGACAAATACACCTGA
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protein sequence of Tc04v2_p009960.3

>Tc04v2_p009960.3 ID=Tc04v2_p009960.3|Name=Tc04v2_p009960.3|organism=Theobroma cacao|type=polypeptide|length=356bp
MLLCSSVSGRSSQSGIFRDKTISSFSLSRSWRKSVMASPPILSLALPSDT
GRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPTFKG
HVLNGQQLWDLIEGLEANDLLYYTHLLTGYIGSVSFLNKVLEVVHQLRCV
NPNLTYVCDPVMGDEGKLYVPEDLVSVYREKVVPVASMLTPNQFEAELLT
KLRIGSETDGREACNILHATGPSKVVITSINIEGNLLLIGSHQKDKEHAP
EQFKIVIPKIPAYFTMMKFQTYCLLKGTGDLMTALLLGWSNKYPNNLDKA
AELAVSSLQALLQRTLSDYRRAGFDSQSSSLEIRLIQSQDDIRNPKLTFK
ADKYT*
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