Tc04v2_t009960.2

Overview
NameTc04v2_t009960.2
Unique NameTc04v2_t009960.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1044
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Productpyridoxal kinase, transcript variant X3
NotePyridoxal kinase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601927
GenbankXM_018120287.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g009960Tc04v2_g009960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p009960.2Tc04v2_p009960.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto217353auto217353Theobroma cacaoexon
exon-auto217354auto217354Theobroma cacaoexon
exon-auto217355auto217355Theobroma cacaoexon
exon-auto217356auto217356Theobroma cacaoexon
exon-auto217357auto217357Theobroma cacaoexon
exon-auto217358auto217358Theobroma cacaoexon
exon-auto217359auto217359Theobroma cacaoexon
exon-auto217360auto217360Theobroma cacaoexon
exon-auto217361auto217361Theobroma cacaoexon
exon-auto217362auto217362Theobroma cacaoexon
exon-auto217363auto217363Theobroma cacaoexon
exon-auto217364auto217364Theobroma cacaoexon
exon-auto217365auto217365Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto217366auto217366Theobroma cacaoCDS
CDS-auto217367auto217367Theobroma cacaoCDS
CDS-auto217368auto217368Theobroma cacaoCDS
CDS-auto217369auto217369Theobroma cacaoCDS
CDS-auto217370auto217370Theobroma cacaoCDS
CDS-auto217371auto217371Theobroma cacaoCDS
CDS-auto217372auto217372Theobroma cacaoCDS
CDS-auto217373auto217373Theobroma cacaoCDS
CDS-auto217374auto217374Theobroma cacaoCDS
CDS-auto217375auto217375Theobroma cacaoCDS
CDS-auto217376auto217376Theobroma cacaoCDS
CDS-auto217377auto217377Theobroma cacaoCDS
CDS-auto217378auto217378Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t009960.2 ID=Tc04v2_t009960.2|Name=Tc04v2_t009960.2|organism=Theobroma cacao|type=mRNA|length=1044bp
ATGCTGCTTTGCTCTTCAGTCAGCGGCCGTTCTTCGCAATCGGGCATTTT
CCGAGATAAAACTATTAGTTCTTTTTCCCTTTCTCGAAGTTGGAGGAAGT
CGGTAATGGCGTCACCTCCGATCTTATCCTTGGCTCTTCCTTCGGATACT
GGTCGAGTTCTCAGCATTCAGTCTCACACAGTTCAGGGATATGTTGGTAA
TAAGTCAGCAGTCTTTCCTCTCCAACTACTTGGCTATGATGTGGACCCAA
TCAATTCAGTACAGTTTTCAAATCACACAGGATACCCAACATTTAAGGGT
CACGTTTTGAATGGACAACAATTGTGGGATTTAATAGAAGGCCTTGAAGC
AAATGATTTATTATACTATACTCATTTATTAACAGGTTATATTGGTTCTG
TTTCTTTTTTGAACAAAGTATTGGAGGTTGTACATCAGCTTCGCTGTGTA
AATCCAAATCTTACTTATGTTTGTGATCCAGTGATGGGTGACGAAGGAAA
GCTCTATGTCCCTGAAGATCTGGTATCAGTATATCGGGAAAAGGTTGTCC
CAGTGGCTTCGATGTTGACTCCTAACCAGTTTGAAGCAGAGTTGTTGACT
AAATTAAGTTACTGCAGGATTGGTTCAGAAACGGATGGTCGGGAAGCTTG
TAACATTCTTCATGCTACTGGGCCTTCAAAGGTTGTGATTACTAGCATCA
ATATAGAAGGCAATCTTCTTCTCATTGGTAGTCATCAGAAAGATAAGGAA
CACGCTCCTGAGCAATTCAAGATTGTGATACCCAAAATTCCTGCATATTT
TACGGGAACAGGAGATCTAATGACTGCACTTCTTCTTGGGTGGAGTAATA
AATATCCCAACAACCTTGACAAGGCAGCAGAGCTAGCAGTATCAAGTTTG
CAGGCACTTTTGCAGAGGACGTTGAGTGACTATAGGAGAGCTGGATTTGA
TTCTCAATCAAGCAGTTTAGAGATCCGGCTGATTCAGAGCCAGGATGACA
TCCGCAACCCAAAATTGACATTCAAAGCTGACAAATACACCTGA
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protein sequence of Tc04v2_p009960.2

>Tc04v2_p009960.2 ID=Tc04v2_p009960.2|Name=Tc04v2_p009960.2|organism=Theobroma cacao|type=polypeptide|length=348bp
MLLCSSVSGRSSQSGIFRDKTISSFSLSRSWRKSVMASPPILSLALPSDT
GRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPTFKG
HVLNGQQLWDLIEGLEANDLLYYTHLLTGYIGSVSFLNKVLEVVHQLRCV
NPNLTYVCDPVMGDEGKLYVPEDLVSVYREKVVPVASMLTPNQFEAELLT
KLSYCRIGSETDGREACNILHATGPSKVVITSINIEGNLLLIGSHQKDKE
HAPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYPNNLDKAAELAVSSL
QALLQRTLSDYRRAGFDSQSSSLEIRLIQSQDDIRNPKLTFKADKYT*
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