Tc04v2_t009590.1

Overview
NameTc04v2_t009590.1
Unique NameTc04v2_t009590.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1089
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Productgeranylgeranyl pyrophosphate synthase 7, chloroplastic
NoteGeranylgeranyl pyrophosphate synthase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601871
GenbankXM_018119285.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g009590Tc04v2_g009590Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p009590.1Tc04v2_p009590.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto216951auto216951Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto216952auto216952Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t009590.1 ID=Tc04v2_t009590.1|Name=Tc04v2_t009590.1|organism=Theobroma cacao|type=mRNA|length=1089bp
ATGGCTCTCTTCAACCCATACCCCAAGTCATGGCAATTCAACCAGTCTTG
CATTATTACCTCGAAAATGATCATATGCCATTTTGGTAATGTAAAGCTTG
TTCGTGGAGTGAATTCAGGCCATGAATTTCGCAAACTTATCTTTCAAACA
ACCTCTGCTAGCAGAAGACTTGCTCACATTTCACAAGACAAGCGGCCATT
AGTAACATTCCAGTTTGAAGAATACTTGGTGATGAAGGGAAAACAAGTTA
ACAACTCACTTGATGAGGCAGTACCTTTACGACACCCGATAAAGATTCAT
GAGGCAATGAGGTACTCTCTTATTGCTGGCGGCAAGCGTGTCCGTCCTAT
TCTTTGTATTGCTTCATGTGAATTAGTAGGAGGAGATAAGTCCTTGGCGA
TGCCAATGGCCTGCGCTCTTGAGATGATACATACTGCATCTTTGATCCAT
GATGACCTTCCATGCATGGACAACGATGATCTCAGACGAGGCAAGCCTAC
AAACCACAAAGTTTTCGGTGAAGCAACTGCAGTTCTTATTGGTGATGCTC
TTATCTCCCTTGCCTTTGAGCATATTGCTTCCAATACAAGAAATATTTCA
CCTGACCGAGTGGTTCGTGCTCTTGCTGAGCTAAGCACAGCGATAGGGTC
CCAAGGGCTTGTGGCAGGTCAAATGATGGATCTTGAGAGTGAGGGAAAAG
AGGTGAGTTTGACTGAATTAGAGTACATTCATGTGCATAAAACCGCCAAG
CTTTTAGAGGCATGTCTAGTTTGTGGTGCCATAATGGGAGGTGGAAATAC
TACTGATATTGAAAAGGTTAGGAAGTATGCAAGGTGCATAGGGTTGTTGT
TTCAGGTTGTGGATGATATCCTAGACGTGACTAAGTCCTCTGAGGAGCTT
GGGAAGACTGCAGGGAAGGATTTGGTTAGTAATAAGGGAACATATCCCAA
GCTGATGGGCATCGACAAGGCCAAGAAGTTTGCCTCTGAGTTGATGATAC
AAGCTGTTGGAGAGCTTGCCTACTTTGATGCTACCAGAGCAGCTCCATTG
TATCATGTAGCAAACTATATTGCTAATCGAGAAAATTAG
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protein sequence of Tc04v2_p009590.1

>Tc04v2_p009590.1 ID=Tc04v2_p009590.1|Name=Tc04v2_p009590.1|organism=Theobroma cacao|type=polypeptide|length=363bp
MALFNPYPKSWQFNQSCIITSKMIICHFGNVKLVRGVNSGHEFRKLIFQT
TSASRRLAHISQDKRPLVTFQFEEYLVMKGKQVNNSLDEAVPLRHPIKIH
EAMRYSLIAGGKRVRPILCIASCELVGGDKSLAMPMACALEMIHTASLIH
DDLPCMDNDDLRRGKPTNHKVFGEATAVLIGDALISLAFEHIASNTRNIS
PDRVVRALAELSTAIGSQGLVAGQMMDLESEGKEVSLTELEYIHVHKTAK
LLEACLVCGAIMGGGNTTDIEKVRKYARCIGLLFQVVDDILDVTKSSEEL
GKTAGKDLVSNKGTYPKLMGIDKAKKFASELMIQAVGELAYFDATRAAPL
YHVANYIANREN*
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