Tc04v2_t009550.1

Overview
NameTc04v2_t009550.1
Unique NameTc04v2_t009550.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1086
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 37 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Productgeranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
NoteGeranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601867
GenbankXM_007032955.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g009550Tc04v2_g009550Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p009550.1Tc04v2_p009550.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto216924auto216924Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto216925auto216925Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t009550.1 ID=Tc04v2_t009550.1|Name=Tc04v2_t009550.1|organism=Theobroma cacao|type=mRNA|length=1086bp
ATGGCCTTCTCTGCAATCATCCCAAGTCATAAAACCTCTTCTCTCATCAA
AATCTCCATTGAAGATCCTATGAAGCTTACCCCATTTTCGCAGATCAACC
TTGTTCCCAGGAAAATTCAGGCTAGCCAGATTGCAAACGCATCTTTACCA
CAAGCGTTCGTATCCAAAGATGGGATGTCCAACTCTGACCCATTGCCTGC
GTTTAACTTCGAAGAGTACATGGCGGACAAGGGACAACGAGTGAACAAAG
CACTTATTAAGGCAGTCCCTTTGAAACATCCAATGCAAATTCATGAAGCA
ATGAGGTACTCCCTTCTAGCTGGTGGCAAGCGCGTCCGTCCTATTCTTTG
TATTGCTGCATGTGAGTTAGTAGGAGGAGAAGAGACCCTGGCAATGCCAG
TGGCTTGCGCGGTGGAGATGATACATACAATGTCACTGATCCATGATGAT
CTTCCTTGTATGGACAACGATGATCTTCGTCGGGGAAAGCCTACCAACCA
CAAGGTTTTCGGGGAAGAAACTGCTGTTCTCGCTAGTGATGCTCTTCTCT
CCCTTGCCTTTGAACATTTAGCTTCAAAGACGACCGAGAATATTTCGCCT
GACCGTGTGGTTCGAGCCATTGCTGAGCTAGGGTCGGCAGTTGGATCAGA
AGGGCTAGTGGGAGGCCAAATAGTGGATCTTGCGAGTGAAGGAAAAGAGA
TAAGTTTGAATGAGTTAGAGTATATCCATTTGCATAAAACTGCCAAGCTT
TTAGAGGCATCCGTTGTTTGTGGTGCTATAATTGGAGGAGGAAATGATGG
TGATGTTGTAAGGGTTAAGAACTATGCTAGATCCATAGGGTTGTTGTTTC
AGGTTGTGGATGATATTTTGGATGTGACCAAGTCCTCGGAGGAGCTTGGG
AAGACGGCAGGGAAGGATTTGGTCAGTAATAAGGCCACTTATCCGAAGCT
GATAGGCGTTGACAATGCCAAGAAGTTTGCAGGGGAGTTGATGACTCAAG
CTGTTGAAGAGCTTGCCTATTTTGATCCCGCAAGAGCTGCTCCATTGTAC
CATTTAGCCAAATTTATTTGTGATCGAGACAACTAG
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protein sequence of Tc04v2_p009550.1

>Tc04v2_p009550.1 ID=Tc04v2_p009550.1|Name=Tc04v2_p009550.1|organism=Theobroma cacao|type=polypeptide|length=362bp
MAFSAIIPSHKTSSLIKISIEDPMKLTPFSQINLVPRKIQASQIANASLP
QAFVSKDGMSNSDPLPAFNFEEYMADKGQRVNKALIKAVPLKHPMQIHEA
MRYSLLAGGKRVRPILCIAACELVGGEETLAMPVACAVEMIHTMSLIHDD
LPCMDNDDLRRGKPTNHKVFGEETAVLASDALLSLAFEHLASKTTENISP
DRVVRAIAELGSAVGSEGLVGGQIVDLASEGKEISLNELEYIHLHKTAKL
LEASVVCGAIIGGGNDGDVVRVKNYARSIGLLFQVVDDILDVTKSSEELG
KTAGKDLVSNKATYPKLIGVDNAKKFAGELMTQAVEELAYFDPARAAPLY
HLAKFICDRDN*
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