Tc04v2_t007700.2

Overview
NameTc04v2_t007700.2
Unique NameTc04v2_t007700.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2124
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productcyclic nucleotide-gated ion channel 2, transcript variant X2
NoteCyclic nucleotide-gated ion channel 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601600
GenbankXM_007032591.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g007700Tc04v2_g007700Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p007700.2Tc04v2_p007700.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto213364auto213364Theobroma cacaoexon
exon-auto213365auto213365Theobroma cacaoexon
exon-auto213366auto213366Theobroma cacaoexon
exon-auto213367auto213367Theobroma cacaoexon
exon-auto213368auto213368Theobroma cacaoexon
exon-auto213369auto213369Theobroma cacaoexon
exon-auto213370auto213370Theobroma cacaoexon
exon-auto213371auto213371Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto213372auto213372Theobroma cacaoCDS
CDS-auto213373auto213373Theobroma cacaoCDS
CDS-auto213374auto213374Theobroma cacaoCDS
CDS-auto213375auto213375Theobroma cacaoCDS
CDS-auto213376auto213376Theobroma cacaoCDS
CDS-auto213377auto213377Theobroma cacaoCDS
CDS-auto213378auto213378Theobroma cacaoCDS
CDS-auto213379auto213379Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t007700.2 ID=Tc04v2_t007700.2|Name=Tc04v2_t007700.2|organism=Theobroma cacao|type=mRNA|length=2124bp
ATGCCTTCTCCGTCCAACTTGTCCCTCTCAAGGTGGATTGGACTCTGCCA
GCTTCAAAACTCCCCCGGCGAGAACTCTGATCACAGCGGCGACATCAACG
AAGACAACCCAATTTCCAACACCGTAGAATGCTACGCTTGCACTCAAGTA
GGAGTTCCAGTTTTCCACTCCACCAGCTGCGACCATGCTCACCAACCTGA
ATGGGAAGCCTCAGCAGGCTCTTCCCTTGTTCCCATTCAGGCCCGAGCGG
GCCAGAAGAAGACTCAAGCTGCTGCATCTCGGCACCCTTCTGGCCCGTTA
GGACGTGTGCTTGATCCAAGGAGCAAGCGCGTGCAGAAATGGAACCGCGC
GTTCCTGCTGGCTCGTGGCATGGCCTTAGCTATTGATCCTCTGTTTTTCT
ATGCTTTATCGATAGGCAGAGGTGGCTTTCCTTGTTTGTACATGGATGGT
GGCCTTGCCGCCATTGTAACCGTCCTTCGCACGTGTGTCGACGCCGTGCA
TTTGTTTCATCTATGGCTTCAGTTCAGGCTGGCGTACGTGTCAAGGGAGT
CACTCGTCGTCGGTTGCGGCAAACTAGTGTGGGACGCACGTGCCATAGCT
TCTCATTACGTTCGTTCCCTTAAAGGTTTCTGGTTTGATGCCTTTGTGAT
TCTCCCAGTTCCTCAGGCAGTATTTTGGTTAGTTGTACCCAAACTAATCA
GAGAAGAGCAGATCAAGCTTATAATGACTATACTGCTATTAATCTTCTTG
TTCCAATTCCTCCCAAAGGTTTACCATAGCATTTGTTTGATGAGAAGGAT
GCAGAAGGTCACAGGTTACATCTTTGGCACCATTTGGTGGGGGTTCGGCC
TTAATCTCATAGCCTACTTCATAGCCTCTCATGTCGCTGGAGGATGCTGG
TATGTCCTCGCAATACAGCGCGTAGCCTCATGCCTCCGGCAACAATGTGA
GAGAAGTGAGAGGTGCAAACTCTCGTTGTCTTGCTCAGAGGAGGTGTGTT
ACCAATTTCTATTTCCAGCCGAAGCAGTAGGGAATCCTTGTGGTGGTAAC
TCAACAAAAGTTGTTGGAAAACCATTATGTTTAGATGTTCAGGGGCCATT
CAATTACGGTATTTATCAGTGGGCTCTTCCTGTCGTTTCTAGCAATTCTG
TTGCTGTTAAGATCCTTTATCCCATATTTTGGGGCTTAATGACTCTCAGC
ACCTTTGGAAACGATCTTGAACCAACAAGTCACTGGTTAGAAGTGATGTT
CAGTATATGCATTGTGCTTGCTGGATTGTTGCTCTTCACTTTATTGATTG
GAAACATCCAGGTTTTCTTGCATGCTGTCATGGCGAAGAAGAGAAAAATG
CAGCTGAGATGTCGTGACATGGAATGGTGGATGAAGCGTAGGCAGTTACC
ATCCCGTTTGAGGCAAAGAGTTCGCCACTTTGAACGCCAGAAATGGGCAA
CTCTGGGAGGAGAGGATGAAATGGAATTAATCAAAGACTTGCCTGAAGGC
CTCCGGAGGGACATTAAGCGCTACCTTTGCCTTGACCTCATCAAAAAGGT
TCCTCTGTTCCACAACTTGGATGACCTTATTCTTGACAACATCTGCGATC
GAGTTAAGCCACTTGTCTTCTCTAAAGACGAAAAGATAATTAGAGAAGGA
GATCCTGTGCAAAGAATGGTGTTTATAGTTCGTGGACGCATAAAGCGTAG
CCAAAGCCTTAGCAAAGGCATGGTAGCCACAAGTATAATTGAGCCAGGAG
GCTTTTTGGGTGATGAGCTGCTCTCCTGGTGTCTTCGTCGCCCATTTATA
GACCGTCTTCCAGCCTCATCTGCAACATTTGTTTGTGTAGAGTCAATTGA
AGCATTTGGCCTTGATGCAAACAATCTCAGATACATCACTGATCACTTCA
GGTACAAATTTGCCAATGAGAGGCTTAAGAGAACAGCGAGATACTATTCA
TCCAATTGGCGAACATGGGCAGCTGTGAATATACAACTTGCCTGGCGGCG
TTACAGAACCAGGACTAGAGGTCCAATGATTTCTGTTACAGAGAATGGAA
ACAGCAGTGATCGCCGGTTGCTGCAATATGCTGCAATGTTCATGTCAATC
AGGCCACATGACCATCTAGAATAA
back to top

protein sequence of Tc04v2_p007700.2

>Tc04v2_p007700.2 ID=Tc04v2_p007700.2|Name=Tc04v2_p007700.2|organism=Theobroma cacao|type=polypeptide|length=708bp
MPSPSNLSLSRWIGLCQLQNSPGENSDHSGDINEDNPISNTVECYACTQV
GVPVFHSTSCDHAHQPEWEASAGSSLVPIQARAGQKKTQAAASRHPSGPL
GRVLDPRSKRVQKWNRAFLLARGMALAIDPLFFYALSIGRGGFPCLYMDG
GLAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDARAIA
SHYVRSLKGFWFDAFVILPVPQAVFWLVVPKLIREEQIKLIMTILLLIFL
FQFLPKVYHSICLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCW
YVLAIQRVASCLRQQCERSERCKLSLSCSEEVCYQFLFPAEAVGNPCGGN
STKVVGKPLCLDVQGPFNYGIYQWALPVVSSNSVAVKILYPIFWGLMTLS
TFGNDLEPTSHWLEVMFSICIVLAGLLLFTLLIGNIQVFLHAVMAKKRKM
QLRCRDMEWWMKRRQLPSRLRQRVRHFERQKWATLGGEDEMELIKDLPEG
LRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREG
DPVQRMVFIVRGRIKRSQSLSKGMVATSIIEPGGFLGDELLSWCLRRPFI
DRLPASSATFVCVESIEAFGLDANNLRYITDHFRYKFANERLKRTARYYS
SNWRTWAAVNIQLAWRRYRTRTRGPMISVTENGNSSDRRLLQYAAMFMSI
RPHDHLE*
back to top