Tc04v2_t007700.1

Overview
NameTc04v2_t007700.1
Unique NameTc04v2_t007700.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2139
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Productcyclic nucleotide-gated ion channel 2, transcript variant X1
NoteCyclic nucleotide-gated ion channel 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601600
GenbankXM_007032592.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g007700Tc04v2_g007700Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p007700.1Tc04v2_p007700.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto213346auto213346Theobroma cacaoexon
exon-auto213347auto213347Theobroma cacaoexon
exon-auto213348auto213348Theobroma cacaoexon
exon-auto213349auto213349Theobroma cacaoexon
exon-auto213350auto213350Theobroma cacaoexon
exon-auto213351auto213351Theobroma cacaoexon
exon-auto213352auto213352Theobroma cacaoexon
exon-auto213353auto213353Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto213354auto213354Theobroma cacaoCDS
CDS-auto213355auto213355Theobroma cacaoCDS
CDS-auto213356auto213356Theobroma cacaoCDS
CDS-auto213357auto213357Theobroma cacaoCDS
CDS-auto213358auto213358Theobroma cacaoCDS
CDS-auto213359auto213359Theobroma cacaoCDS
CDS-auto213360auto213360Theobroma cacaoCDS
CDS-auto213361auto213361Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t007700.1 ID=Tc04v2_t007700.1|Name=Tc04v2_t007700.1|organism=Theobroma cacao|type=mRNA|length=2139bp
ATGCCTTCTCCGTCCAACTTGTCCCTCTCAAGGTGGATTGGACTCTGCCA
GCTTCAAAACTCCCCCGGCGAGAACTCTGATCACAGCGGCGACATCAACG
AAGACAACCCAATTTCCAACACCGTAGAATGCTACGCTTGCACTCAAGTA
GGAGTTCCAGTTTTCCACTCCACCAGCTGCGACCATGCTCACCAACCTGA
ATGGGAAGCCTCAGCAGGCTCTTCCCTTGTTCCCATTCAGGCCCGAGCGG
GCCAGAAGAAGACTCAAGCTGCTGCATCTCGGCACCCTTCTGGCCCGTTA
GGACGTGTGCTTGATCCAAGGAGCAAGCGCGTGCAGAAATGGAACCGCGC
GTTCCTGCTGGCTCGTGGCATGGCCTTAGCTATTGATCCTCTGTTTTTCT
ATGCTTTATCGATAGGCAGAGGTGGCTTTCCTTGTTTGTACATGGATGGT
GGCCTTGCCGCCATTGTAACCGTCCTTCGCACGTGTGTCGACGCCGTGCA
TTTGTTTCATCTATGGCTTCAGTTCAGGCTGGCGTACGTGTCAAGGGAGT
CACTCGTCGTCGGTTGCGGCAAACTAGTGTGGGACGCACGTGCCATAGCT
TCTCATTACGTTCGTTCCCTTAAAGGTTTCTGGTTTGATGCCTTTGTGAT
TCTCCCAGTTCCTCAGGCAGTATTTTGGTTAGTTGTACCCAAACTAATCA
GAGAAGAGCAGATCAAGCTTATAATGACTATACTGCTATTAATCTTCTTG
TTCCAATTCCTCCCAAAGGTTTACCATAGCATTTGTTTGATGAGAAGGAT
GCAGAAGGTCACAGGTTACATCTTTGGCACCATTTGGTGGGGGTTCGGCC
TTAATCTCATAGCCTACTTCATAGCCTCTCATGTCGCTGGAGGATGCTGG
TATGTCCTCGCAATACAGCGCGTAGCCTCATGCCTCCGGCAACAATGTGA
GAGAAGTGAGAGGTGCAAACTCTCGTTGTCTTGCTCAGAGGAGGTGTGTT
ACCAATTTCTATTTCCAGCCGAAGCAGTAGGGAATCCTTGTGGTGGTAAC
TCAACAAAAGTTGTTGGAAAACCATTATGTTTAGATGTTCAGGGGCCATT
CAATTACGGTATTTATCAGTGGGCTCTTCCTGTCGTTTCTAGCAATTCTG
TTGCTGTTAAGATCCTTTATCCCATATTTTGGGGCTTAATGACTCTCAGC
ACCTTTGGAAACGATCTTGAACCAACAAGTCACTGGTTAGAAGTGATGTT
CAGTATATGCATTGTGCTTGCTGGATTGTTGCTCTTCACTTTATTGATTG
GAAACATCCAGGTTTTCTTGCATGCTGTCATGGCGAAGAAGAGAAAAATG
CAGCTGAGATGTCGTGACATGGAATGGTGGATGAAGCGTAGGCAGTTACC
ATCCCGTTTGAGGCAAAGAGTTCGCCACTTTGAACGCCAGAAATGGGCAA
CTCTGGGAGGAGAGGATGAAATGGAATTAATCAAAGACTTGCCTGAAGGC
CTCCGGAGGGACATTAAGCGCTACCTTTGCCTTGACCTCATCAAAAAGGT
TCCTCTGTTCCACAACTTGGATGACCTTATTCTTGACAACATCTGCGATC
GAGTTAAGCCACTTGTCTTCTCTAAAGACGAAAAGGTGCAAGCTTACGAG
ATAATTAGAGAAGGAGATCCTGTGCAAAGAATGGTGTTTATAGTTCGTGG
ACGCATAAAGCGTAGCCAAAGCCTTAGCAAAGGCATGGTAGCCACAAGTA
TAATTGAGCCAGGAGGCTTTTTGGGTGATGAGCTGCTCTCCTGGTGTCTT
CGTCGCCCATTTATAGACCGTCTTCCAGCCTCATCTGCAACATTTGTTTG
TGTAGAGTCAATTGAAGCATTTGGCCTTGATGCAAACAATCTCAGATACA
TCACTGATCACTTCAGGTACAAATTTGCCAATGAGAGGCTTAAGAGAACA
GCGAGATACTATTCATCCAATTGGCGAACATGGGCAGCTGTGAATATACA
ACTTGCCTGGCGGCGTTACAGAACCAGGACTAGAGGTCCAATGATTTCTG
TTACAGAGAATGGAAACAGCAGTGATCGCCGGTTGCTGCAATATGCTGCA
ATGTTCATGTCAATCAGGCCACATGACCATCTAGAATAA
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protein sequence of Tc04v2_p007700.1

>Tc04v2_p007700.1 ID=Tc04v2_p007700.1|Name=Tc04v2_p007700.1|organism=Theobroma cacao|type=polypeptide|length=713bp
MPSPSNLSLSRWIGLCQLQNSPGENSDHSGDINEDNPISNTVECYACTQV
GVPVFHSTSCDHAHQPEWEASAGSSLVPIQARAGQKKTQAAASRHPSGPL
GRVLDPRSKRVQKWNRAFLLARGMALAIDPLFFYALSIGRGGFPCLYMDG
GLAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDARAIA
SHYVRSLKGFWFDAFVILPVPQAVFWLVVPKLIREEQIKLIMTILLLIFL
FQFLPKVYHSICLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCW
YVLAIQRVASCLRQQCERSERCKLSLSCSEEVCYQFLFPAEAVGNPCGGN
STKVVGKPLCLDVQGPFNYGIYQWALPVVSSNSVAVKILYPIFWGLMTLS
TFGNDLEPTSHWLEVMFSICIVLAGLLLFTLLIGNIQVFLHAVMAKKRKM
QLRCRDMEWWMKRRQLPSRLRQRVRHFERQKWATLGGEDEMELIKDLPEG
LRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSKDEKVQAYE
IIREGDPVQRMVFIVRGRIKRSQSLSKGMVATSIIEPGGFLGDELLSWCL
RRPFIDRLPASSATFVCVESIEAFGLDANNLRYITDHFRYKFANERLKRT
ARYYSSNWRTWAAVNIQLAWRRYRTRTRGPMISVTENGNSSDRRLLQYAA
MFMSIRPHDHLE*
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