Tc04v2_t005260.2

Overview
NameTc04v2_t005260.2
Unique NameTc04v2_t005260.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length906
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 59 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productserine/threonine-protein phosphatase PP1 isozyme 1, transcript variant X1
NoteSerine/threonine-protein phosphatase PP1 isozyme 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601297
GenbankXM_018119837.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g005260Tc04v2_g005260Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p005260.2Tc04v2_p005260.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto209528auto209528Theobroma cacaoexon
exon-auto209529auto209529Theobroma cacaoexon
exon-auto209530auto209530Theobroma cacaoexon
exon-auto209531auto209531Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto209532auto209532Theobroma cacaoCDS
CDS-auto209533auto209533Theobroma cacaoCDS
CDS-auto209534auto209534Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t005260.2 ID=Tc04v2_t005260.2|Name=Tc04v2_t005260.2|organism=Theobroma cacao|type=mRNA|length=906bp
ATGGAAGGATTGGAAGGCATGATAGAGAGGTTGTTGGAAGGAAGGAACAA
CAGAGGGAAAAGAATCCAGCTAAATGAGTCTGAAATCAGACAACTTTGCC
TCACTGCCAAGAAAGTCTTCCTCAACCAACCTAATCTCCTTGAATTAGGA
GCTCCCATTAACATCTGCGGTGATATACATGGCCAATATTCGGACCTTCT
ACGGTTGTTTGAGTATGGTGGATTTCCACCAAATGCCAACTACTTGTTTC
TTGGAGACTATGTGGACAGAGGAAAGCAAAGTATAGAGACTATATGTCTC
CTCCTTGCTTACAAGATAAAATTCCCAGACAACTTTTTCCTCCTTAGGGG
AAATCATGAATGTGCTTCTATCAACCGAATCTATGGGTTCTATGATGAGT
GCAAGCGCCATTTCAGTGTCCGTCTGTGGAAGGTGTTTACAGATTGCTTC
AATTGTTTGCCGGTGGCTGCAGTCATTGATGAAAAAATCCTTTGCATGCA
TGGTGGACTCTCACCAGAAATGCGGAGCTTGGATCAAATAAGAGCTATAG
AAAGGCCAATAGATGTTCCAGACCAAGGTCTTCTTTGTGACCTCCTTTGG
GCTGATCCGGATAGAGATATCAGCGGTTGGGGTGAAAATGATAGGGGTGT
CTCCTATACTTTTGGAGCTGACAAGGTAGCTGAGTTCTTAAAGAAACATG
ACCTAGATCTCATATGCCGAGCTCATCAGGTAGTGGAAGATGGTTATGAA
TTCTTTGCAGATAGGCAACTTGTTACCATATTTTCTGCACCAAACTATTG
TGGAGAATTTAATAATGCAGGTGCACTGATGAGTGTGGATCCAAGCTTGC
TCTGCTCATTTCAGATTCTTAAGCCTAGTACGGAAACAATGGGATTGCTG
GAATAA
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protein sequence of Tc04v2_p005260.2

>Tc04v2_p005260.2 ID=Tc04v2_p005260.2|Name=Tc04v2_p005260.2|organism=Theobroma cacao|type=polypeptide|length=302bp
MEGLEGMIERLLEGRNNRGKRIQLNESEIRQLCLTAKKVFLNQPNLLELG
APINICGDIHGQYSDLLRLFEYGGFPPNANYLFLGDYVDRGKQSIETICL
LLAYKIKFPDNFFLLRGNHECASINRIYGFYDECKRHFSVRLWKVFTDCF
NCLPVAAVIDEKILCMHGGLSPEMRSLDQIRAIERPIDVPDQGLLCDLLW
ADPDRDISGWGENDRGVSYTFGADKVAEFLKKHDLDLICRAHQVVEDGYE
FFADRQLVTIFSAPNYCGEFNNAGALMSVDPSLLCSFQILKPSTETMGLL
E*
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