Tc04v2_t005260.1

Overview
NameTc04v2_t005260.1
Unique NameTc04v2_t005260.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length906
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 59 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productserine/threonine-protein phosphatase PP1 isozyme 1, transcript variant X2
NoteSerine/threonine-protein phosphatase PP1 isozyme 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601297
GenbankXM_018119838.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g005260Tc04v2_g005260Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p005260.1Tc04v2_p005260.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto209519auto209519Theobroma cacaoexon
exon-auto209520auto209520Theobroma cacaoexon
exon-auto209521auto209521Theobroma cacaoexon
exon-auto209522auto209522Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto209523auto209523Theobroma cacaoCDS
CDS-auto209524auto209524Theobroma cacaoCDS
CDS-auto209525auto209525Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t005260.1 ID=Tc04v2_t005260.1|Name=Tc04v2_t005260.1|organism=Theobroma cacao|type=mRNA|length=906bp
ATGGAAGGATTGGAAGGCATGATAGAGAGGTTGTTGGAAGGAAGGAACAA
CAGAGGGAAAAGAATCCAGCTAAATGAGTCTGAAATCAGACAACTTTGCC
TCACTGCCAAGAAAGTCTTCCTCAACCAACCTAATCTCCTTGAATTAGGA
GCTCCCATTAACATCTGCGGTGATATACATGGCCAATATTCGGACCTTCT
ACGGTTGTTTGAGTATGGTGGATTTCCACCAAATGCCAACTACTTGTTTC
TTGGAGACTATGTGGACAGAGGAAAGCAAAGTATAGAGACTATATGTCTC
CTCCTTGCTTACAAGATAAAATTCCCAGACAACTTTTTCCTCCTTAGGGG
AAATCATGAATGTGCTTCTATCAACCGAATCTATGGGTTCTATGATGAGT
GCAAGCGCCATTTCAGTGTCCGTCTGTGGAAGGTGTTTACAGATTGCTTC
AATTGTTTGCCGGTGGCTGCAGTCATTGATGAAAAAATCCTTTGCATGCA
TGGTGGACTCTCACCAGAAATGCGGAGCTTGGATCAAATAAGAGCTATAG
AAAGGCCAATAGATGTTCCAGACCAAGGTCTTCTTTGTGACCTCCTTTGG
GCTGATCCGGATAGAGATATCAGCGGTTGGGGTGAAAATGATAGGGGTGT
CTCCTATACTTTTGGAGCTGACAAGGTAGCTGAGTTCTTAAAGAAACATG
ACCTAGATCTCATATGCCGAGCTCATCAGGTAGTGGAAGATGGTTATGAA
TTCTTTGCAGATAGGCAACTTGTTACCATATTTTCTGCACCAAACTATTG
TGGAGAATTTAATAATGCAGGTGCACTGATGAGTGTGGATCCAAGCTTGC
TCTGCTCATTTCAGATTCTTAAGCCTAGTACGGAAACAATGGGATTGCTG
GAATAA
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protein sequence of Tc04v2_p005260.1

>Tc04v2_p005260.1 ID=Tc04v2_p005260.1|Name=Tc04v2_p005260.1|organism=Theobroma cacao|type=polypeptide|length=302bp
MEGLEGMIERLLEGRNNRGKRIQLNESEIRQLCLTAKKVFLNQPNLLELG
APINICGDIHGQYSDLLRLFEYGGFPPNANYLFLGDYVDRGKQSIETICL
LLAYKIKFPDNFFLLRGNHECASINRIYGFYDECKRHFSVRLWKVFTDCF
NCLPVAAVIDEKILCMHGGLSPEMRSLDQIRAIERPIDVPDQGLLCDLLW
ADPDRDISGWGENDRGVSYTFGADKVAEFLKKHDLDLICRAHQVVEDGYE
FFADRQLVTIFSAPNYCGEFNNAGALMSVDPSLLCSFQILKPSTETMGLL
E*
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