Tc04v2_t005100.3

Overview
NameTc04v2_t005100.3
Unique NameTc04v2_t005100.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1095
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productautophagy protein 5, transcript variant X2
NoteAutophagy protein 5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601270
GenbankXM_007032154.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g005100Tc04v2_g005100Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p005100.3Tc04v2_p005100.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto209182auto209182Theobroma cacaoexon
exon-auto209183auto209183Theobroma cacaoexon
exon-auto209184auto209184Theobroma cacaoexon
exon-auto209185auto209185Theobroma cacaoexon
exon-auto209186auto209186Theobroma cacaoexon
exon-auto209187auto209187Theobroma cacaoexon
exon-auto209188auto209188Theobroma cacaoexon
exon-auto209189auto209189Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto209190auto209190Theobroma cacaoCDS
CDS-auto209191auto209191Theobroma cacaoCDS
CDS-auto209192auto209192Theobroma cacaoCDS
CDS-auto209193auto209193Theobroma cacaoCDS
CDS-auto209194auto209194Theobroma cacaoCDS
CDS-auto209195auto209195Theobroma cacaoCDS
CDS-auto209196auto209196Theobroma cacaoCDS
CDS-auto209197auto209197Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t005100.3 ID=Tc04v2_t005100.3|Name=Tc04v2_t005100.3|organism=Theobroma cacao|type=mRNA|length=1095bp
ATGCGAAAGGCGATACAGAAAAGAATGGAAGCAAAGAAGTATGTATGGGA
GGGCGCGATTCCTCTTCAGATCCATCTACACGAATCCCAAGTGACCACTC
TGCCTCCTCCTCCTCCTTCCCTGATCTTAGCTCCTCGAATCGGCTATCTG
CCGCTGTTAGTTCCTTTGATAAAGCCTCATTTTAGTAGCACACTTCCTCC
GGGTGTTGATACCATTTGGTTTGAATACAGGGGCCTTCCTCTCAAATGGT
ACATACCAACTGGAGTTCTTTTTGATCTTCTATGTGCGGAGCCTGAAAGG
CCTTGGAATATCACTGTGCATTTTAGAGGATATCCTGGAAATGTATTGAT
ACCCTGTGATGGTGAAGATTCTGTGAAGTGGAGCTTTATAAACTCATTAA
AAGAGGCGGCATATATAATCAATGGAAATTGCAAGAATGTGATGAACATG
TCTCAGTCTGATCAGCTGGAGCTTTGGCATTCTGTCATGAATGGTAATTT
GGAGGCCTACCTACGGGTCTCGTCTAAGCTTAAACTTGCAACAATTGAGG
ATGAGTATACAAGTTTGTGTTCATCAAAATCTCAACAAGGCTCTGGAGAA
ACAGATTTTACTGGACAGGTCAAGACAGGCAGAGTTCCAGTTAGATTATA
TGTCTGGAGCATAAGTGAGGATTTTGATGATTTGGAAGACTTGTCTCAAG
TTGATAGTTGGGAGAAGATCTCTTACATAAATCGACCTATTGAGATCCAC
AAAGAAGGTAAATGCTTCACATTACATGATGCTATGAAAAGTCTTCTGCC
AGAATTTTTTTCTGACGAATCCTTAAGTGACTCGAAATTAGCTAGAGTAG
ATTTTGAGGATGCACAGAAAATTCCCTCAGAAGATGTGAGCAGTAATAAA
GTTGTGGAAGACCAGGGACAAAATGCATATGAACACCGAGAGGCTTGCTG
CATTTCCAGTAGTGCTGAAATCAAGCTCATCCGTATTCAAGGTATTGAAC
CAAAGTTAGAGATACCCTTTTCTTGGCTGGTGAACAACTTATTAAATCCG
GACCATTTTCTCCACATCTGTGTCTGTGTCAAAGTTCCACAGTGA
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protein sequence of Tc04v2_p005100.3

>Tc04v2_p005100.3 ID=Tc04v2_p005100.3|Name=Tc04v2_p005100.3|organism=Theobroma cacao|type=polypeptide|length=365bp
MRKAIQKRMEAKKYVWEGAIPLQIHLHESQVTTLPPPPPSLILAPRIGYL
PLLVPLIKPHFSSTLPPGVDTIWFEYRGLPLKWYIPTGVLFDLLCAEPER
PWNITVHFRGYPGNVLIPCDGEDSVKWSFINSLKEAAYIINGNCKNVMNM
SQSDQLELWHSVMNGNLEAYLRVSSKLKLATIEDEYTSLCSSKSQQGSGE
TDFTGQVKTGRVPVRLYVWSISEDFDDLEDLSQVDSWEKISYINRPIEIH
KEGKCFTLHDAMKSLLPEFFSDESLSDSKLARVDFEDAQKIPSEDVSSNK
VVEDQGQNAYEHREACCISSSAEIKLIRIQGIEPKLEIPFSWLVNNLLNP
DHFLHICVCVKVPQ*
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