Tc04v2_t005100.2

Overview
NameTc04v2_t005100.2
Unique NameTc04v2_t005100.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length999
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productautophagy protein 5, transcript variant X3
NoteAutophagy protein 5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601270
GenbankXM_018120015.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g005100Tc04v2_g005100Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p005100.2Tc04v2_p005100.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto209166auto209166Theobroma cacaoexon
exon-auto209167auto209167Theobroma cacaoexon
exon-auto209168auto209168Theobroma cacaoexon
exon-auto209169auto209169Theobroma cacaoexon
exon-auto209170auto209170Theobroma cacaoexon
exon-auto209171auto209171Theobroma cacaoexon
exon-auto209172auto209172Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto209173auto209173Theobroma cacaoCDS
CDS-auto209174auto209174Theobroma cacaoCDS
CDS-auto209175auto209175Theobroma cacaoCDS
CDS-auto209176auto209176Theobroma cacaoCDS
CDS-auto209177auto209177Theobroma cacaoCDS
CDS-auto209178auto209178Theobroma cacaoCDS
CDS-auto209179auto209179Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t005100.2 ID=Tc04v2_t005100.2|Name=Tc04v2_t005100.2|organism=Theobroma cacao|type=mRNA|length=999bp
ATGCGAAAGGCGATACAGAAAAGAATGGAAGCAAAGAAGTATGTATGGGA
GGGCGCGATTCCTCTTCAGATCCATCTACACGAATCCCAAGTGACCACTC
TGCCTCCTCCTCCTCCTTCCCTGATCTTAGCTCCTCGAATCGGCTATCTG
CCGCTGTTAGTTCCTTTGATAAAGCCTCATTTTAGTAGCACACTTCCTCC
GGGTGTTGATACCATTTGGTTTGAATACAGGGGCCTTCCTCTCAAATGCC
AAAACCAACCACCCAACGGAGGCTTCTTTTGTTGCAGGTACATACCAACT
GGAGTTCTTTTTGATCTTCTATGTGCGGAGCCTGAAAGGCCTTGGAATAT
CACTGTGCATTTTAGAGGATATCCTGGAAATGTATTGATACCCTGTGATG
GTGAAGATTCTGTGAAGTGGAGCTTTATAAACTCATTAAAAGAGGCGGCA
TATATAATCAATGGAAATTGCAAGAATGTGATGAACATGTCTCAGTCTGA
TCAGCTGGAGCTTTGGCATTCTGTCATGAATGGCAGAGTTCCAGTTAGAT
TATATGTCTGGAGCATAAGTGAGGATTTTGATGATTTGGAAGACTTGTCT
CAAGTTGATAGTTGGGAGAAGATCTCTTACATAAATCGACCTATTGAGAT
CCACAAAGAAGGTAAATGCTTCACATTACATGATGCTATGAAAAGTCTTC
TGCCAGAATTTTTTTCTGACGAATCCTTAAGTGACTCGAAATTAGCTAGA
GTAGATTTTGAGGATGCACAGAAAATTCCCTCAGAAGATGTGAGCAGTAA
TAAAGTTGTGGAAGACCAGGGACAAAATGCATATGAACACCGAGAGGCTT
GCTGCATTTCCAGTAGTGCTGAAATCAAGCTCATCCGTATTCAAGGTATT
GAACCAAAGTTAGAGATACCCTTTTCTTGGCTGGTGAACAACTTATTAAA
TCCGGACCATTTTCTCCACATCTGTGTCTGTGTCAAAGTTCCACAGTGA
back to top

protein sequence of Tc04v2_p005100.2

>Tc04v2_p005100.2 ID=Tc04v2_p005100.2|Name=Tc04v2_p005100.2|organism=Theobroma cacao|type=polypeptide|length=333bp
MRKAIQKRMEAKKYVWEGAIPLQIHLHESQVTTLPPPPPSLILAPRIGYL
PLLVPLIKPHFSSTLPPGVDTIWFEYRGLPLKCQNQPPNGGFFCCRYIPT
GVLFDLLCAEPERPWNITVHFRGYPGNVLIPCDGEDSVKWSFINSLKEAA
YIINGNCKNVMNMSQSDQLELWHSVMNGRVPVRLYVWSISEDFDDLEDLS
QVDSWEKISYINRPIEIHKEGKCFTLHDAMKSLLPEFFSDESLSDSKLAR
VDFEDAQKIPSEDVSSNKVVEDQGQNAYEHREACCISSSAEIKLIRIQGI
EPKLEIPFSWLVNNLLNPDHFLHICVCVKVPQ*
back to top