Tc04v2_t004800.1

Overview
NameTc04v2_t004800.1
Unique NameTc04v2_t004800.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1914
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
Productlysine--tRNA ligase, chloroplastic/mitochondrial, transcript variant X3
NoteLysine--tRNA ligase, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601229
GenbankXM_007032097.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g004800Tc04v2_g004800Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p004800.1Tc04v2_p004800.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto208549auto208549Theobroma cacaoexon
exon-auto208550auto208550Theobroma cacaoexon
exon-auto208551auto208551Theobroma cacaoexon
exon-auto208552auto208552Theobroma cacaoexon
exon-auto208553auto208553Theobroma cacaoexon
exon-auto208554auto208554Theobroma cacaoexon
exon-auto208555auto208555Theobroma cacaoexon
exon-auto208556auto208556Theobroma cacaoexon
exon-auto208557auto208557Theobroma cacaoexon
exon-auto208558auto208558Theobroma cacaoexon
exon-auto208559auto208559Theobroma cacaoexon
exon-auto208560auto208560Theobroma cacaoexon
exon-auto208561auto208561Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto208562auto208562Theobroma cacaoCDS
CDS-auto208563auto208563Theobroma cacaoCDS
CDS-auto208564auto208564Theobroma cacaoCDS
CDS-auto208565auto208565Theobroma cacaoCDS
CDS-auto208566auto208566Theobroma cacaoCDS
CDS-auto208567auto208567Theobroma cacaoCDS
CDS-auto208568auto208568Theobroma cacaoCDS
CDS-auto208569auto208569Theobroma cacaoCDS
CDS-auto208570auto208570Theobroma cacaoCDS
CDS-auto208571auto208571Theobroma cacaoCDS
CDS-auto208572auto208572Theobroma cacaoCDS
CDS-auto208573auto208573Theobroma cacaoCDS
CDS-auto208574auto208574Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t004800.1 ID=Tc04v2_t004800.1|Name=Tc04v2_t004800.1|organism=Theobroma cacao|type=mRNA|length=1914bp
ATGGAGGGCTTGAGGGTGTGGAGGCTAAGCTCATCAATTGCAAGGCCGTT
AAGTTTAAGGCAACCACTTGGATTGGGTTATTCTTCCTGTGAACTAGTCC
TTTGCTCGAATAGCGGCGTTGTCACCGCCACCAACACCAGGCTGCCCTCT
CGCGATAGTCGGTCTTTTACATTCACTTCAACCTCCACTTCGAATCTTGA
AGTTGCTTGTGCCATCCGCCTGAAAAAGGTGGAACCATTGTGGAGCAAAG
GGTCGCAACCTTATGCTTATAAGTGGGATAGAAGTTATAGATTGGGCTCT
TCTTCCTCTGATCTAGTCCCTTGCTGCTCAGATGGCGGCGCTGCCGCTAC
CAACACCAAGCTGCACTCTCGCAATCGTGGGTCTTCGACTTCGACTTCCA
CTTCAGACCGTGAAGCCGTACGTGCTATCCGTTTGAAAAAGGTGGAACAA
TTGCGGAGCAAAGGGTTGGAGCCGTATGCGTATAAGTGGGATAGAAGTCA
CAGTGCTAGGGAGTTGCAAGAAATATATAAGAATCTAAATAACGGTGAAG
AGTTAGATAGTGAGAGTCATCATGTCTCTATTGCAGGCAGAATTGTTGCT
CGCAGAGCCTTTGGAAAGCTTGCTTTTCTCACTTTAAGAGATCACTCCAG
CAGTATTCAGCTTTACTGTGAGAAGGAAAGGCTTTTGAATAATCAGTTTG
AGCAGTTAAAGACACTTGTTGATATTGGTGATATATTAGGTGCATCTGGC
TCTATCAAGCGGACTGAGAAAGGGGAGCTTTCTGTTAAGGTGGATTCTTT
TGCAATTCTTACAAAATCTCTGCTTCCGTTGCCTGACAAGTATCATGGTC
TAACTGACATTGATAAGCGTTATCGTCAAAGGTATGTTGATATGATTGCA
AATCCTGAAGTAGCTGATTTATTCCGGAAACGAGCAAAGATTGTGACGGA
GATACGAAAGACGGTGGAATCTCAGGGTTTTGTTGAAGTTGAAACTCCAG
TTCTGCAGGGAGCAGCTGGCGGGGCTGAAGCAAGACCATTCATGACATAC
CATAACTCCCTTGGAAGGAACCTTTATCTAAGAATTGCAACTGAACTTCA
CTTGAAGAGAATGCTGGTTGGAGGATTTGAAAAAGTATATGAGATTGGTC
GTATATTCAGAAATGAAGGCATTTCAACTCGTCATAATCCAGAATTTACG
ACCATAGAGATGTATGAGGCATATTCAGACTACGAATCTATGATGGACAT
GGCTGAGGAAATTGTTACCCGATGTGCTCTTGCAGTTCATGGAGAGCTCA
CCATTGATTACCAGGGGGTTGAGATACATTTGGAGAGGCCATGGAGGCGG
GAAACCATGCACAATCTTGTTAAAGAAGCCACTGGGATTGATTTCACTGA
ATTTGAAAATGATCTTAAAGTTGCTAAAGATGTTGTTATGAAGGCACTGG
GAGTTGGGCTTGATAGTAAGGACAAGTTTTCCATTGAAGCCTGCCCTTCA
CTTGGCCACCTTCTTAATGAGGTTTTCGAAATTTTTGTTGAACCAAAGCT
CCTGCAACCTACATTTGTTTTGGACTATCCCATGGAAATATCTCCTCTTG
CCAAACCACACCGGAGGCATGCAGGTTTGACTGAGAGATTTGAACTCTTC
ATATGTGGTCGTGAACTGGCTAATGCATTCTCTGAGTTAACTGATCCTTT
GGACCAGAGAGCCCGCCTGGAAGAGCAAGTAAGGCAACATAACAAGAAGA
GAGCAGAAGCTGTTTCAGTCACAGATAGTATGGAAGAAAAAGATCATAAA
AATGAAGACTCTATGTATGAAGTGACTCTTGATGATGATTTTCTTACTGC
TTTGGAATATGGAATGCCCCCGGCTTCAGGAATGGCTGTTCCTAACGATT
TTGTTGAGGTCTGA
back to top

protein sequence of Tc04v2_p004800.1

>Tc04v2_p004800.1 ID=Tc04v2_p004800.1|Name=Tc04v2_p004800.1|organism=Theobroma cacao|type=polypeptide|length=638bp
MEGLRVWRLSSSIARPLSLRQPLGLGYSSCELVLCSNSGVVTATNTRLPS
RDSRSFTFTSTSTSNLEVACAIRLKKVEPLWSKGSQPYAYKWDRSYRLGS
SSSDLVPCCSDGGAAATNTKLHSRNRGSSTSTSTSDREAVRAIRLKKVEQ
LRSKGLEPYAYKWDRSHSARELQEIYKNLNNGEELDSESHHVSIAGRIVA
RRAFGKLAFLTLRDHSSSIQLYCEKERLLNNQFEQLKTLVDIGDILGASG
SIKRTEKGELSVKVDSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIA
NPEVADLFRKRAKIVTEIRKTVESQGFVEVETPVLQGAAGGAEARPFMTY
HNSLGRNLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFT
TIEMYEAYSDYESMMDMAEEIVTRCALAVHGELTIDYQGVEIHLERPWRR
ETMHNLVKEATGIDFTEFENDLKVAKDVVMKALGVGLDSKDKFSIEACPS
LGHLLNEVFEIFVEPKLLQPTFVLDYPMEISPLAKPHRRHAGLTERFELF
ICGRELANAFSELTDPLDQRARLEEQVRQHNKKRAEAVSVTDSMEEKDHK
NEDSMYEVTLDDDFLTALEYGMPPASGMAVPNDFVEV*
back to top