Tc04v2_t003680.2

Overview
NameTc04v2_t003680.2
Unique NameTc04v2_t003680.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length870
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
Productprobable inactive shikimate kinase like 1, chloroplastic, transcript variant X2
NoteProbable inactive shikimate kinase like 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601083
GenbankXM_007031901.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g003680Tc04v2_g003680Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p003680.2Tc04v2_p003680.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto206089auto206089Theobroma cacaoexon
exon-auto206090auto206090Theobroma cacaoexon
exon-auto206091auto206091Theobroma cacaoexon
exon-auto206092auto206092Theobroma cacaoexon
exon-auto206093auto206093Theobroma cacaoexon
exon-auto206094auto206094Theobroma cacaoexon
exon-auto206095auto206095Theobroma cacaoexon
exon-auto206096auto206096Theobroma cacaoexon
exon-auto206097auto206097Theobroma cacaoexon
exon-auto206098auto206098Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto206099auto206099Theobroma cacaoCDS
CDS-auto206100auto206100Theobroma cacaoCDS
CDS-auto206101auto206101Theobroma cacaoCDS
CDS-auto206102auto206102Theobroma cacaoCDS
CDS-auto206103auto206103Theobroma cacaoCDS
CDS-auto206104auto206104Theobroma cacaoCDS
CDS-auto206105auto206105Theobroma cacaoCDS
CDS-auto206106auto206106Theobroma cacaoCDS
CDS-auto206107auto206107Theobroma cacaoCDS
CDS-auto206108auto206108Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t003680.2 ID=Tc04v2_t003680.2|Name=Tc04v2_t003680.2|organism=Theobroma cacao|type=mRNA|length=870bp
ATGGAGATGGCAACTATTCTTCACTCTTCTCTCCCTAGTCTCCCATTCCA
CAATCCTGTTTTGCACCCAAAATTCCCACACTCTTTCTCCACAAAAATCG
ACCGACGGACTTCTCTTTTCTCTCAAAGTCTCACAATTTCTCGTCCTCCC
CCTCGAAAATCTCTCTCCACCAACTGCTCTGTCTCTGATGACACAGCTTT
CACAACAAAGGTTGCTACTGTGGATCCCTCTATTGCTTTGAAGAAGAAAG
CAATGGATATATCCGCTGATCTGAGAGGAACTTCTATATTTCTTGTGGGG
ATGAACAACTCCATTAAATCCAGTTTGGGGAAACTGCTAGCAGATTTATT
ACGATATTATTACTTTGATAGTGATGCTTTGGTCTCGGAAGCTGCTGGGG
GTGAATCTGCTGCCATATCCTTAAAGGAGAGTGATGAGAAAGGATTCCGG
GGGTCTGAGACTGAAGTTCTGAAGCAGTTATCATCCATGGGTAGACTAGT
GGTGTGTGCTGGTGATGGTGCAGTTCAAAGTTCAACTAATTTGGCACTTC
TAAGGTATGGCATCTCGATATGGGTTGATGTGCCCTTGGACATGGTAGCC
AAGGGAATAATTGAAAAGAAGAGTCAACTTTTGTCATCAGAAATAGTGAA
TTCTGGATCTTATTCTGAGCTAACAGCTCTTTATGAAGACATGAGAAGTG
GATATGCCACGGCTGATGCAACTGTTTCCATTCAAAAAGTAGCATATCAG
CTAGGTTACGAGGACATGGATGTAGTGTCAAAAGAAGACATTACTATGGA
GGTTCTCAAGGAGATAGAGAGACTTACAAGAGTAAAAAAGATGATGGAAG
AAGCAGCTAGACCATTTTAA
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protein sequence of Tc04v2_p003680.2

>Tc04v2_p003680.2 ID=Tc04v2_p003680.2|Name=Tc04v2_p003680.2|organism=Theobroma cacao|type=polypeptide|length=290bp
MEMATILHSSLPSLPFHNPVLHPKFPHSFSTKIDRRTSLFSQSLTISRPP
PRKSLSTNCSVSDDTAFTTKVATVDPSIALKKKAMDISADLRGTSIFLVG
MNNSIKSSLGKLLADLLRYYYFDSDALVSEAAGGESAAISLKESDEKGFR
GSETEVLKQLSSMGRLVVCAGDGAVQSSTNLALLRYGISIWVDVPLDMVA
KGIIEKKSQLLSSEIVNSGSYSELTALYEDMRSGYATADATVSIQKVAYQ
LGYEDMDVVSKEDITMEVLKEIERLTRVKKMMEEAARPF*
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