Tc04v2_t002460.1

Overview
NameTc04v2_t002460.1
Unique NameTc04v2_t002460.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1014
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 274 ESTs, 96 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productglyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
NoteGlyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600934
GenbankXM_007031682.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g002460Tc04v2_g002460Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p002460.1Tc04v2_p002460.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto203963auto203963Theobroma cacaoexon
exon-auto203964auto203964Theobroma cacaoexon
exon-auto203965auto203965Theobroma cacaoexon
exon-auto203966auto203966Theobroma cacaoexon
exon-auto203967auto203967Theobroma cacaoexon
exon-auto203968auto203968Theobroma cacaoexon
exon-auto203969auto203969Theobroma cacaoexon
exon-auto203970auto203970Theobroma cacaoexon
exon-auto203971auto203971Theobroma cacaoexon
exon-auto203972auto203972Theobroma cacaoexon
exon-auto203973auto203973Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto203974auto203974Theobroma cacaoCDS
CDS-auto203975auto203975Theobroma cacaoCDS
CDS-auto203976auto203976Theobroma cacaoCDS
CDS-auto203977auto203977Theobroma cacaoCDS
CDS-auto203978auto203978Theobroma cacaoCDS
CDS-auto203979auto203979Theobroma cacaoCDS
CDS-auto203980auto203980Theobroma cacaoCDS
CDS-auto203981auto203981Theobroma cacaoCDS
CDS-auto203982auto203982Theobroma cacaoCDS
CDS-auto203983auto203983Theobroma cacaoCDS
CDS-auto203984auto203984Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t002460.1 ID=Tc04v2_t002460.1|Name=Tc04v2_t002460.1|organism=Theobroma cacao|type=mRNA|length=1014bp
ATGGCGAAGATCAAGATCGGAATCAACGGATTTGGAAGAATCGGGCGTTT
GGTTGCCAGAGTCGCTCTCCAAAGCGATGATATTGAGCTTGTTGCTGTTA
ACGATCCTTTTATCAGCATTGAATACATGATCTACATGTTTAAGTACGAC
AGTGTTCACGGTCAATGGAAGAACCATGAGCTTAAGGTGAAGGACCCAAA
GACCCTTCTCTTCGGTGAAAAGCCTGTCACTGTTTTCGGCATCAGAAACC
CTGAGGAAATCCCCTGGGGGGAGTCTGGAGCTGAGTATGTTGTTGAGTCT
ACTGGTGTTTTCACCGACAAGGACAAAGCTGCTGCTCACTTGAAGGGTGG
TGCAAAGAAGGTGATCATTTCTGCTCCCAGTAAGGATGCCCCCATGTTTG
TTGTGGGTGTCAATGAGAAGGAATACAAGCCTCACCTTGATATTGTCTCC
AATGCTAGCTGCACTACAAACTGCCTTGCTCCTTTGGCTAAAGTCATCAA
TGACAAATTTGGCATTGTTGAGGGTCTCATGACCACTGTCCATTCAATTA
CTGCTACCCAAAAGACTGTTGATGGTCCCTCAATGAAGGACTGGAGAGGT
GGTAGAGCTGCTTCCTTCAACATCATTCCCAGCAGCACTGGAGCTGCCAA
GGCTGTTGGCAAGGTGTTACCTGCGTTGAATGGCAAGCTGACTGGAATGG
CTTTCCGTGTTCCCACTGTTGATGTCTCTGTGGTTGACCTCACCGTGAGA
CTTGAGAAGCCAGCTTCTTATGAGGATATTAAGAGTGCTGTCAAGGTGGC
ATCTGAAACCTACATGAAGGGAATTCTTGGTTATGTAGATGAAGATTTGG
TGTCATCTGACTTTGTTGGTGACAGAAGGTCAAGCATTTTTGATGCCAAG
GCTGGAATTGCTTTGAATGAAAAGTTTGCTAAGCTTGTTGCATGGTATGA
CAACGAGTGGGGTTACAGTTCCCGTGTTGTTGACTTGATCCGATACATGG
CTTCTTGCAAGTGA
back to top

protein sequence of Tc04v2_p002460.1

>Tc04v2_p002460.1 ID=Tc04v2_p002460.1|Name=Tc04v2_p002460.1|organism=Theobroma cacao|type=polypeptide|length=338bp
MAKIKIGINGFGRIGRLVARVALQSDDIELVAVNDPFISIEYMIYMFKYD
SVHGQWKNHELKVKDPKTLLFGEKPVTVFGIRNPEEIPWGESGAEYVVES
TGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPHLDIVS
NASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRG
GRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVR
LEKPASYEDIKSAVKVASETYMKGILGYVDEDLVSSDFVGDRRSSIFDAK
AGIALNEKFAKLVAWYDNEWGYSSRVVDLIRYMASCK*
back to top