Tc04v2_t001980.1

Overview
NameTc04v2_t001980.1
Unique NameTc04v2_t001980.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1335
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productglycerol-3-phosphate dehydrogenase [NAD( )]
NoteGlycerol-3-phosphate dehydrogenase [NAD( )]
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600884
GenbankXM_018119868.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g001980Tc04v2_g001980Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p001980.1Tc04v2_p001980.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto202979auto202979Theobroma cacaoexon
exon-auto202980auto202980Theobroma cacaoexon
exon-auto202981auto202981Theobroma cacaoexon
exon-auto202982auto202982Theobroma cacaoexon
exon-auto202983auto202983Theobroma cacaoexon
exon-auto202984auto202984Theobroma cacaoexon
exon-auto202985auto202985Theobroma cacaoexon
exon-auto202986auto202986Theobroma cacaoexon
exon-auto202987auto202987Theobroma cacaoexon
exon-auto202988auto202988Theobroma cacaoexon
exon-auto202989auto202989Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto202990auto202990Theobroma cacaoCDS
CDS-auto202991auto202991Theobroma cacaoCDS
CDS-auto202992auto202992Theobroma cacaoCDS
CDS-auto202993auto202993Theobroma cacaoCDS
CDS-auto202994auto202994Theobroma cacaoCDS
CDS-auto202995auto202995Theobroma cacaoCDS
CDS-auto202996auto202996Theobroma cacaoCDS
CDS-auto202997auto202997Theobroma cacaoCDS
CDS-auto202998auto202998Theobroma cacaoCDS
CDS-auto202999auto202999Theobroma cacaoCDS
CDS-auto203000auto203000Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t001980.1 ID=Tc04v2_t001980.1|Name=Tc04v2_t001980.1|organism=Theobroma cacao|type=mRNA|length=1335bp
ATGCGCTTTCCTTTCCCCTTATATTATTCTCCTTCTTCTCTCTTCTCTAA
CTTCTCTTCCTCTCCTTATTCCTTCTTTTCCTCGTTGCCACTCATCTTTG
CCTCCTCTCATTTCTCTCCATTTCGTTCCATTTCTTTACCTGTTTCCATG
GCTCCTGCCTTTGAACAAGTCCCAGTCCCACAGGAGGGTGAAACTGCAAC
ACCCCATGACACCAACACTGGGAACAATGTTGGTAATGATGGTCAAGCTG
GTTTTAAATCAAGGATCACAGTGGTCGGAAGTGGCAATTGGGGTAGTGTT
GCTGCTAAGCTCATTGCTTCTAACACTCTCAAGCTCAACTCTTTTCATGA
TGAAGTGAGGATGTGGGTATTTGAGGAGACATTGCCAAGTGGTGAGAAGC
TCACAGATGTCATTAACCGAACTAATGAGAATGCTAAATATCTCCCTGGT
ATTAAGCTAGGTAAAAATGTCATTGCAGATCCAGACCTCGACAATGCAGT
TAAAGATGCAAATATGTTGGTTTTTGTGACCCCCCATCAATTTATGGAGG
GTATATGCAAGAGGCTTGTTGGTAAAGTGAGTGGAGATGTGGAGGCTATT
TCCCTCATTAAAGGGATGGAGGTCAAGATGGAAGGCCCTTGCATGATCTC
CACTCTTATTTCTGAGCAGCTTGGCATCAACTGTTCTGTTTTGATGGGGG
CAAATATCGCAAATGAGATTGCTGTCGAGAAGTTCAGTGAAGCAACAGTT
GGGTACAGAGACAACAGAGAGATTGCAGAACAATGGGTTCAATTATTCAG
CACACCTTATTTCATGGTCACTCCTGTTCAGGACGTGGAAGGTGTTGAGC
TATGTGGGACTTTGAAGAATGTTGTGGCCATAGCAGCTGGTTTTGTGGAT
GGACTTGACATGGGAAATAACACAAAGGCTGCAATAATGAGAATTGGTCT
GAGAGAGATGAGAGCTTTCTCCAAGCTGTTATTTTCATCTGTTAGGGATA
GTACCTTCTTTGAAAGCTGTGGAGTTGCTGATGTCATCACAACATGCTTG
GGGGGAAGAAACAGAAAAGTTGCCGAGGCATTTGCTAAAAATGGAGGAAA
AAGATCTTTTGATGAGCTTGAAGCTGAGATGTTGCAGGGCCAGAAATTAC
AGGGTGTATCCACGGCAAGAGAGGTCTATGAAGTTTTAAGCCACCGTGGA
TGGCTAGAGTTGTTTCCTTTATTTGCAACAGTGCACGAGATCTGCATTGG
TCATCTTCCACCATCAGCCATAGTTGAATACAGTGAGAAGAAACCAAGGT
TGTCCCTATTAGAGGACTCTGCTCGTTACCATTGA
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protein sequence of Tc04v2_p001980.1

>Tc04v2_p001980.1 ID=Tc04v2_p001980.1|Name=Tc04v2_p001980.1|organism=Theobroma cacao|type=polypeptide|length=445bp
MRFPFPLYYSPSSLFSNFSSSPYSFFSSLPLIFASSHFSPFRSISLPVSM
APAFEQVPVPQEGETATPHDTNTGNNVGNDGQAGFKSRITVVGSGNWGSV
AAKLIASNTLKLNSFHDEVRMWVFEETLPSGEKLTDVINRTNENAKYLPG
IKLGKNVIADPDLDNAVKDANMLVFVTPHQFMEGICKRLVGKVSGDVEAI
SLIKGMEVKMEGPCMISTLISEQLGINCSVLMGANIANEIAVEKFSEATV
GYRDNREIAEQWVQLFSTPYFMVTPVQDVEGVELCGTLKNVVAIAAGFVD
GLDMGNNTKAAIMRIGLREMRAFSKLLFSSVRDSTFFESCGVADVITTCL
GGRNRKVAEAFAKNGGKRSFDELEAEMLQGQKLQGVSTAREVYEVLSHRG
WLELFPLFATVHEICIGHLPPSAIVEYSEKKPRLSLLEDSARYH*
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