Tc04v2_t001900.1

Overview
NameTc04v2_t001900.1
Unique NameTc04v2_t001900.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1437
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productcytochrome P450 724B1
NoteCytochrome P450 724B1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600875
GenbankXM_007031594.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g001900Tc04v2_g001900Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p001900.1Tc04v2_p001900.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto202855auto202855Theobroma cacaoexon
exon-auto202856auto202856Theobroma cacaoexon
exon-auto202857auto202857Theobroma cacaoexon
exon-auto202858auto202858Theobroma cacaoexon
exon-auto202859auto202859Theobroma cacaoexon
exon-auto202860auto202860Theobroma cacaoexon
exon-auto202861auto202861Theobroma cacaoexon
exon-auto202862auto202862Theobroma cacaoexon
exon-auto202863auto202863Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto202864auto202864Theobroma cacaoCDS
CDS-auto202865auto202865Theobroma cacaoCDS
CDS-auto202866auto202866Theobroma cacaoCDS
CDS-auto202867auto202867Theobroma cacaoCDS
CDS-auto202868auto202868Theobroma cacaoCDS
CDS-auto202869auto202869Theobroma cacaoCDS
CDS-auto202870auto202870Theobroma cacaoCDS
CDS-auto202871auto202871Theobroma cacaoCDS
CDS-auto202872auto202872Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t001900.1 ID=Tc04v2_t001900.1|Name=Tc04v2_t001900.1|organism=Theobroma cacao|type=mRNA|length=1437bp
ATGGTTGGTCTCTTCCCCCTCCTCTTGTTATCTCTCTTGCTAGGGCTAGG
ACTCCATTTCCTTCTACAAGTTTTTGCAAAACAAGAGCCTGCAAACTTGC
CCCATGGGAGTATGGGGTGGCCTTTGTGTGGGGAGACTCTTGGTTTCCTT
AAGCCTCACAGATCAAACTCCATGGGAAACTTCTTGCAAGAACATTGCTC
TAGGTACGGAAGAGTGTTCAAATCTCATCTGTTTGGTTCCCCAACAGTAG
TTTCCTGCGACCATGAGCTTAACTGGTTTGTTCTTCAGAATGAAGAGAAG
TTTTTTCGGGTCAGTTACCCCAAGGCCATGCATGGCATTCTTGGCAAGTT
CTCTTTGCTTATTGTTTCTGGGGATGTTCACAAAAAGCTACGAAATGTTG
GGGCCAGCTTCATCAGTGCCTCTAAATCAAAGCCGAACTTCGCTAATTGT
GTCGAAAAGATGTCAATCTCGATGATGAATTCATGGAAAAATTGTAAACA
AATTGGCTTCTATAAAGAAGTGAAAAAGTTCACACTCAACCTTATGTTGA
AGCATCTCTTGAGTATTGAACCAGAGGAGCCACTGGCCGTCAAGATCCTG
GAAGATTTTCTAACTTACATGAAAGGTTTTGTGTCTTTGCCAGTATACAT
CCCTGGAACACCTTACGCCAGTGCGGTGAAGGCTAGAGCAAGGCTTTCGG
CAACTGTTAGAGAGATTATAAAAGAAAGGAAAAAGGAGAAGTTGGGGCTT
GAAGAAGGAGATTTCTTGGATATAATTTTGTCAAAAGGTAGTTTGAGTGA
TGAAGAAACAGTTAGCATTGTGTTGGACATTTTGCTTGGAGGCTATGAAA
CAACAGCAACACTGATGGCCTTGATTGTCTACTTTCTTGCCCATGCTCCA
GATGCTATAGAAAAATTAAAGCAAGAACATAATGCAATAAGGAACAGCAA
AGAGGATGGAGAACCCTTGAGCTGGGAAGATTACCAGAAAATGGAATTCA
CCTGCAATGTTGTTTATGAAGCAATGAGGTGTGGGAATGTGGTCAAATTT
GTGCACAGGATAGCTCTTCAAGATGTCAAATTCAAAGGATATTTCATTCC
CTCGGGATGGAAGGTTCTTCCTGTCTTCACAGCAGCTCACTTTGATCCAT
CTCTTCATGAAAATCCTTTGGAGTTTAATCCTTGGAGATGGACTGATAAA
GCAACAAGCAAAAAGGTGATGCCATTTGGTGGTGGTCCTCGGCTATGTCC
AGGGGCTGAGCTTGCTAAAGTAGAGATTGCATTCTTCCTTCATCATCTTG
TCCTGAATTATAGGTGGAAAACAATGGCAGATGATTTCCCTCTTGCTTAC
CCCTATGTGGAGTTCAGGAGAGGCTTGCTTTTGGAGATTGAGCCAGTAGA
AGCTATGCTGGAAAAGAAACCTAATTGTACTACTTGA
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protein sequence of Tc04v2_p001900.1

>Tc04v2_p001900.1 ID=Tc04v2_p001900.1|Name=Tc04v2_p001900.1|organism=Theobroma cacao|type=polypeptide|length=479bp
MVGLFPLLLLSLLLGLGLHFLLQVFAKQEPANLPHGSMGWPLCGETLGFL
KPHRSNSMGNFLQEHCSRYGRVFKSHLFGSPTVVSCDHELNWFVLQNEEK
FFRVSYPKAMHGILGKFSLLIVSGDVHKKLRNVGASFISASKSKPNFANC
VEKMSISMMNSWKNCKQIGFYKEVKKFTLNLMLKHLLSIEPEEPLAVKIL
EDFLTYMKGFVSLPVYIPGTPYASAVKARARLSATVREIIKERKKEKLGL
EEGDFLDIILSKGSLSDEETVSIVLDILLGGYETTATLMALIVYFLAHAP
DAIEKLKQEHNAIRNSKEDGEPLSWEDYQKMEFTCNVVYEAMRCGNVVKF
VHRIALQDVKFKGYFIPSGWKVLPVFTAAHFDPSLHENPLEFNPWRWTDK
ATSKKVMPFGGGPRLCPGAELAKVEIAFFLHHLVLNYRWKTMADDFPLAY
PYVEFRRGLLLEIEPVEAMLEKKPNCTT*
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