Tc04v2_t001770.2

Overview
NameTc04v2_t001770.2
Unique NameTc04v2_t001770.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length387
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Producttranscription initiation factor TFIID subunit 13, transcript variant X3
NoteTranscription initiation factor TFIID subunit 13
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600861
GenbankXM_018118789.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g001770Tc04v2_g001770Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p001770.2Tc04v2_p001770.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto202560auto202560Theobroma cacaoexon
exon-auto202561auto202561Theobroma cacaoexon
exon-auto202562auto202562Theobroma cacaoexon
exon-auto202563auto202563Theobroma cacaoexon
exon-auto202564auto202564Theobroma cacaoexon
exon-auto202565auto202565Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto202566auto202566Theobroma cacaoCDS
CDS-auto202567auto202567Theobroma cacaoCDS
CDS-auto202568auto202568Theobroma cacaoCDS
CDS-auto202569auto202569Theobroma cacaoCDS
CDS-auto202570auto202570Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t001770.2 ID=Tc04v2_t001770.2|Name=Tc04v2_t001770.2|organism=Theobroma cacao|type=mRNA|length=387bp
ATGAGTAACCAATCAACAGGAACCTCTTCAAAATCGAAAGTTGGGTCTTC
ACAGCCCTCAGAAACTTCATTCAAGCGTAAAAGAGGAGTTTTTCAGAAAG
ATTTGCAGCATATGATGTATGGTTTTGGAGATGATCCCAATCCACTTCCA
GAGACTGTTTCGCTTGTGGAGGACATTGTTGTGGAATATGTAACAGATCT
GGCACATAAAGCCCAAGATATTGGATCAAAGAGGGGAAAGCTATCAGTTG
AGGATTTTCTTTACCTAATTCGCAAGGATTTGCCCAAACTAAATCGTTCT
ACAGAATTGCTATCCATGCAAGAGGAGCTGAAACAAGCAAGGAAGGCATT
CGAGGTTGATGAAGAGAAACTGGGAACAACAGAGTAA
back to top

protein sequence of Tc04v2_p001770.2

>Tc04v2_p001770.2 ID=Tc04v2_p001770.2|Name=Tc04v2_p001770.2|organism=Theobroma cacao|type=polypeptide|length=129bp
MSNQSTGTSSKSKVGSSQPSETSFKRKRGVFQKDLQHMMYGFGDDPNPLP
ETVSLVEDIVVEYVTDLAHKAQDIGSKRGKLSVEDFLYLIRKDLPKLNRS
TELLSMQEELKQARKAFEVDEEKLGTTE*
back to top