Tc04v2_t001680.1

Overview
NameTc04v2_t001680.1
Unique NameTc04v2_t001680.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1161
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productuncharacterized LOC18600852, transcript variant X2
NoteBeta-1,4-N-acetylglucosaminyltransferase family protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600852
GenbankXM_018120329.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g001680Tc04v2_g001680Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p001680.1Tc04v2_p001680.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto202273auto202273Theobroma cacaoexon
exon-auto202274auto202274Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto202275auto202275Theobroma cacaoCDS
CDS-auto202276auto202276Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t001680.1 ID=Tc04v2_t001680.1|Name=Tc04v2_t001680.1|organism=Theobroma cacao|type=mRNA|length=1161bp
ATGTCTGATGGGTACTATAATTCGAAGAAGACTGATGATATCTGTGAAGA
AGTTTGTGGACAGGCGTCCCGGGCAGCATTGACTATGTCTAGATTGCGGT
GCATGTTGCGGGGCTTCGATATCAAGACTTATATTTTCCTGTTTGTGGTT
ATCCCGGTATTCATCTTTGGCATATTTTTGCACGGGCAGAAAATCACCTA
TTTCCTAAGACCAATATGGGAATCTCCTCCTAAGCCTTTCCATGAAATCC
CTCACTATTATCATGAGAATGTGACAATGGAGACTCTCTGCAGCCTTCAT
GGGTGGAAAATTCGTGAGTCCCCTAGACGAGTCTTTGATGCAGTGTTGTT
CAGCAATGAGATAGATATTCTCAAACTTCGTTGGAATGAATTGTATCCAT
ACATAACGCAATTTGTGCTTCTTGAGTCCAACTCGACATTTACTGGCTTA
CCAAAACCATTGATTTTTGCTAGCAACAGACTGGAATTTAAATTTATTGA
GCCTCGTTTGACATATGGGATGATTGGTGGGAGATTCAAGAAGGGAGAAA
ACCCTTTTGTTGAGGAGGCATACCAGAGAGTTGCATTGGACCAGCTTATC
AGAATAGCTGGTATAGAAGATGATGATTTATTGATAATGTCTGATGTGGA
TGAGATCCCTAGTGCACATACCATTAATCTATTGAGATGGTGTGATGGTG
TACCGCCTATCATTCATCTTCAATTGAGAAACTATTTGTACTCTTTTGAG
TATCATGTAGACAACAAGAGCTGGAGAGCCTCAGTCCACAGATACAAGAC
AGGCAAGACTAGATATGCTCATTATCGTCAAGCTGATGTCGTTTTGTCAG
ATGCAGGGTGGCATTGTAGCTTTTGCTTTCGGCATATTCGTGAGTTTATA
TTCAAGATGAAAGCTTACAGCCATACTGATAGAGTGAGGTTCTCTCACTA
CTTGAACCCCAAGAGGATCCAGGATGTAATATGCAGAGGGGCTGACCTAT
TTGACATGATTCCTGAGGAATACACGTTCAAGGAGATCATTGGGAAGATG
GGACCTATCCCTCACTCCTATTCAGCTGTCCATCTTCCTGCATATTTGTT
GAATAATGCGGAAGAATACAAATATCTTTTGCCTGGTAACTGCAAAAGAG
AGAGTGGCTGA
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protein sequence of Tc04v2_p001680.1

>Tc04v2_p001680.1 ID=Tc04v2_p001680.1|Name=Tc04v2_p001680.1|organism=Theobroma cacao|type=polypeptide|length=387bp
MSDGYYNSKKTDDICEEVCGQASRAALTMSRLRCMLRGFDIKTYIFLFVV
IPVFIFGIFLHGQKITYFLRPIWESPPKPFHEIPHYYHENVTMETLCSLH
GWKIRESPRRVFDAVLFSNEIDILKLRWNELYPYITQFVLLESNSTFTGL
PKPLIFASNRLEFKFIEPRLTYGMIGGRFKKGENPFVEEAYQRVALDQLI
RIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDGVPPIIHLQLRNYLYSFE
YHVDNKSWRASVHRYKTGKTRYAHYRQADVVLSDAGWHCSFCFRHIREFI
FKMKAYSHTDRVRFSHYLNPKRIQDVICRGADLFDMIPEEYTFKEIIGKM
GPIPHSYSAVHLPAYLLNNAEEYKYLLPGNCKRESG*
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