Tc04v2_t001010.1

Overview
NameTc04v2_t001010.1
Unique NameTc04v2_t001010.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1239
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 59 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productshaggy-related protein kinase epsilon, transcript variant X2
NoteShaggy-related protein kinase epsilon
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600782
GenbankXM_018120218.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g001010Tc04v2_g001010Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p001010.1Tc04v2_p001010.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto200923auto200923Theobroma cacaoexon
exon-auto200924auto200924Theobroma cacaoexon
exon-auto200925auto200925Theobroma cacaoexon
exon-auto200926auto200926Theobroma cacaoexon
exon-auto200927auto200927Theobroma cacaoexon
exon-auto200928auto200928Theobroma cacaoexon
exon-auto200929auto200929Theobroma cacaoexon
exon-auto200930auto200930Theobroma cacaoexon
exon-auto200931auto200931Theobroma cacaoexon
exon-auto200932auto200932Theobroma cacaoexon
exon-auto200933auto200933Theobroma cacaoexon
exon-auto200934auto200934Theobroma cacaoexon
exon-auto200935auto200935Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto200936auto200936Theobroma cacaoCDS
CDS-auto200937auto200937Theobroma cacaoCDS
CDS-auto200938auto200938Theobroma cacaoCDS
CDS-auto200939auto200939Theobroma cacaoCDS
CDS-auto200940auto200940Theobroma cacaoCDS
CDS-auto200941auto200941Theobroma cacaoCDS
CDS-auto200942auto200942Theobroma cacaoCDS
CDS-auto200943auto200943Theobroma cacaoCDS
CDS-auto200944auto200944Theobroma cacaoCDS
CDS-auto200945auto200945Theobroma cacaoCDS
CDS-auto200946auto200946Theobroma cacaoCDS
CDS-auto200947auto200947Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t001010.1 ID=Tc04v2_t001010.1|Name=Tc04v2_t001010.1|organism=Theobroma cacao|type=mRNA|length=1239bp
ATGGCTTCAACTGGTATGGCCGCCACTTCAGCGGTTGGAAAGCCTACAGG
TAATACTACATTAGTCGACAAACTCCCAGAGGAGATCAATGAAATGAAGA
TTAAGGATGAGAAAGTTGAAAAGGAAATGGAAGCAACAGTGGTAGATGGA
AATGGAACTGAAACAGGACATATTATAGTTACTACTATTGGTGGTAGAAA
TGGTGAACCCAAGCAGACCATAAGTTATATGGCTGAGCGTGTTGTTGGTC
AGGGATCTTTTGGAATTGTATTTCAGGCTAAGTGTCTAGAAAGTGGAGAA
ACTGTAGCAATCAAGAAGGTTTTACAGGACAAGAGATATAAAAACCGCGA
GTTGCAAACAATGCGCCTACTTGATCATCCCAATGTTGTGTCACTCAAGC
ACTGTTTCTTTTCAACGACTGATAAGGATGAGCTCTATCTTAATTTGGTG
CTTGAATATGTTCCTGAGACTGTATATCGTGTAGCAAAGCACTATAGTAG
AGCAAATCAGCGAATGCCACTAATATATGTCAAACTCTACACATACCAGA
TTTGTAGAGCTTTGGCATATATCCATGGGGGTGTAGGTGTATGCCACAGG
GATATTAAACCGCAGAATCTTCTGGTTAATCCCCATACTCATCAGGTCAA
GCTTTGTGATTTTGGAAGTGCAAAAGTTCTGGTCAAAGGCGAGCCAAATA
TATCATATATCTGTTCTCGTTACTATCGAGCACCTGAACTCATATTTGGG
GCAACAGAGTACACAACTGCAATTGACATATGGTCTGTTGGTTGTGTCCT
TGCTGAATTGCTTCTTGGACAGCCTCTCTTTCCAGGTGAGAGTGGAGTTG
ACCAGCTTGTTGAGATTATTAAGGTACTTGGGACTCCAACTCGAGAGGAG
ATAAAATGCATGAATCCAAACTATACAGAGTTCAAATTCCCTCAAATCAA
GGCTCATCCTTGGCATAAAATATTCCACAAGCGCATGCCTCCAGAAGCGG
TTGATCTCGTCTCAAGACTTCTCCAATATTCTCCAAATCTGAGGTGCACT
GCATTAGAGGCCTGTATCCATCCATTTTTTGATGAACTTCGCGATCCTAA
TGCTCACCTTCCTAATGGGCGCCCCTTGCCTCCACTGTTCAACTTTAAAC
CTCAAGAGCTGAAAGGAGTGAGTTTGGAGCTTCTGGCCAAGCTAATACCA
GAACATGCTCGAAAGCAATGCCCCTTCCTTGGCTTCTAA
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protein sequence of Tc04v2_p001010.1

>Tc04v2_p001010.1 ID=Tc04v2_p001010.1|Name=Tc04v2_p001010.1|organism=Theobroma cacao|type=polypeptide|length=413bp
MASTGMAATSAVGKPTGNTTLVDKLPEEINEMKIKDEKVEKEMEATVVDG
NGTETGHIIVTTIGGRNGEPKQTISYMAERVVGQGSFGIVFQAKCLESGE
TVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLV
LEYVPETVYRVAKHYSRANQRMPLIYVKLYTYQICRALAYIHGGVGVCHR
DIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFG
ATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREE
IKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCT
ALEACIHPFFDELRDPNAHLPNGRPLPPLFNFKPQELKGVSLELLAKLIP
EHARKQCPFLGF*
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