Tc04v2_t000960.1

Overview
NameTc04v2_t000960.1
Unique NameTc04v2_t000960.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1437
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productmonodehydroascorbate reductase 4, peroxisomal
NoteMonodehydroascorbate reductase 4, peroxisomal
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600776
GenbankXM_007031431.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g000960Tc04v2_g000960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p000960.1Tc04v2_p000960.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto200788auto200788Theobroma cacaoexon
exon-auto200789auto200789Theobroma cacaoexon
exon-auto200790auto200790Theobroma cacaoexon
exon-auto200791auto200791Theobroma cacaoexon
exon-auto200792auto200792Theobroma cacaoexon
exon-auto200793auto200793Theobroma cacaoexon
exon-auto200794auto200794Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto200795auto200795Theobroma cacaoCDS
CDS-auto200796auto200796Theobroma cacaoCDS
CDS-auto200797auto200797Theobroma cacaoCDS
CDS-auto200798auto200798Theobroma cacaoCDS
CDS-auto200799auto200799Theobroma cacaoCDS
CDS-auto200800auto200800Theobroma cacaoCDS
CDS-auto200801auto200801Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t000960.1 ID=Tc04v2_t000960.1|Name=Tc04v2_t000960.1|organism=Theobroma cacao|type=mRNA|length=1437bp
ATGGGAAGAGCATTTGTATATGTAATTCTCGGAGGAGGTGTGGCAGCAGG
ATATGCAGCCCTTGAATTTACAAAAAGAGGGGTCTCTCATGGTGAACTTT
GCATTATTTCTGAAGAACCTGTTGCCCCATATGAGAGGCCGGCTTTAAGC
AAAGGCTTTTTACTTCCTGAATCTCCTGCACGTCTTCCATCATTTCACAC
TTGTGTTGGTGCTAATGAGGAAAGGTTAAATCCAAAATGGTACAAGGAAC
ATGGGATTGAATTAGTCCTCGGAACTCGAGTTAAGTCTGCTGATGTGAGA
CGCAAGACGTTATTAACAGCAACTGGAGAGACTATAAGTTACAAGATCCT
CATCATTGCAACAGGTGCTCGGGCTTTGAAGCTTGAAGAATTTGGAGTGA
GTGGATCAGAAGCTGAAAATGTATGTTATTTACGAGATTTAGCAGATGCG
AACAGCCTTGTCAAAGTGATGCAATCTTGTGCTGGTGGAAACGCTGTTGT
CATTGGTGGTGGGTACATTGGAATGGAGTGTACTGCATCTTTGGTGATCA
ATAAAATAAATGTAACCATGGTTTTCCCTGAAGCACATTGCATGGCTCGT
TTATTTACACCCAAGATTGCAAGCTATTATGAGGATTATTATCAGTCTAA
AGGAGTGAAGTTCATTAAAGGAACTGTTTTGTCATCATTTGAATTTGACT
CCAGTGGAAAGGTTACGGCTGTTAATCTTAGGGATGGAAGTCGGCTACCT
GCAGACATGGTCTTGGTGGGAATTGGAATACGCCCAAACACAAGCCTGTT
TGAAGGACAACTGACATTGGAGAAAGGTGGGATCAAAGTGAACGGAAAGT
TACAAACAAGCAACAACTCAGTTTATGCAGTCGGAGATGTTGCAGCATTT
CCAGTCAACCTATTTGGTGAAACGCGCAGACTTGAGCATGTTGATTCAGC
CCGAAAATCTGCGAAACATGCTGTTGCTGCGATCTTGGAACCAGAGAAAA
CAGGTGAGTTTGACTACCTGCCATTCTTCTACTCCAGAGTCTTTGCATTT
TCTTGGCAGTCTTTTGGGGACAATGCAGGAGAGGTAGTGCATTTTGGGGA
TTCCTCAGGGAGTACCTTTGGGGCTTATTGGATAAGCAAGGGTCATCTTG
TTGGGTCTTTCCTTGAAGGGGGAACCAAAGAAGAGTATGAAGCCATAGCC
AATGCCACCAGGCTTCAACCAGCTGTTGAGGATCTGGCTGAGGTGGGAAG
GCAGGGTCTGAACTTTGCTCTGACAGTTAGTAAGAGACCGCTGCCTACAC
CACCCATTGAAGTCAGCAGGTCGAGCCTTGTTGTGGAAAAACCAGTCTAT
GCTTGGCATGCAACAGCCGGTGTTGTTCTGGCTGCATCCGTAGCTGGATT
TGCATATTGGTACGGAAGGAGACGTAGAAGGTGGTGA
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protein sequence of Tc04v2_p000960.1

>Tc04v2_p000960.1 ID=Tc04v2_p000960.1|Name=Tc04v2_p000960.1|organism=Theobroma cacao|type=polypeptide|length=479bp
MGRAFVYVILGGGVAAGYAALEFTKRGVSHGELCIISEEPVAPYERPALS
KGFLLPESPARLPSFHTCVGANEERLNPKWYKEHGIELVLGTRVKSADVR
RKTLLTATGETISYKILIIATGARALKLEEFGVSGSEAENVCYLRDLADA
NSLVKVMQSCAGGNAVVIGGGYIGMECTASLVINKINVTMVFPEAHCMAR
LFTPKIASYYEDYYQSKGVKFIKGTVLSSFEFDSSGKVTAVNLRDGSRLP
ADMVLVGIGIRPNTSLFEGQLTLEKGGIKVNGKLQTSNNSVYAVGDVAAF
PVNLFGETRRLEHVDSARKSAKHAVAAILEPEKTGEFDYLPFFYSRVFAF
SWQSFGDNAGEVVHFGDSSGSTFGAYWISKGHLVGSFLEGGTKEEYEAIA
NATRLQPAVEDLAEVGRQGLNFALTVSKRPLPTPPIEVSRSSLVVEKPVY
AWHATAGVVLAASVAGFAYWYGRRRRRW*
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