Tc04v2_t000680.1

Overview
NameTc04v2_t000680.1
Unique NameTc04v2_t000680.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1149
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 32 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productformate dehydrogenase, mitochondrial
NoteFormate dehydrogenase, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600748
GenbankXM_007031387.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g000680Tc04v2_g000680Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p000680.1Tc04v2_p000680.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto200295auto200295Theobroma cacaoexon
exon-auto200296auto200296Theobroma cacaoexon
exon-auto200297auto200297Theobroma cacaoexon
exon-auto200298auto200298Theobroma cacaoexon
exon-auto200299auto200299Theobroma cacaoexon
exon-auto200300auto200300Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto200301auto200301Theobroma cacaoCDS
CDS-auto200302auto200302Theobroma cacaoCDS
CDS-auto200303auto200303Theobroma cacaoCDS
CDS-auto200304auto200304Theobroma cacaoCDS
CDS-auto200305auto200305Theobroma cacaoCDS
CDS-auto200306auto200306Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t000680.1 ID=Tc04v2_t000680.1|Name=Tc04v2_t000680.1|organism=Theobroma cacao|type=mRNA|length=1149bp
ATGGCTATGAAGCAAGTTGCTAGCTCTGCTATCAAAGCCTTGGCTAATTC
TGGGTCATCTTCTGTTCTTACCAGACAACTCCATGCTTCTCCAGGGAGCA
AAAAGATTGTTGGTGTGTTTTACAAGGCCAATGAGTATTACGAAAAGAAT
CCCAACTTTGTTGGTTGTGTGGAGGGAGCCTTGGGCTTGCGTGAGTGGCT
GGAATCACAGGGCCACCAGTATATTGTCACTGATGACAAAGAAGGACCCG
ATTGCGAACTCGAAAAGCATATCCCTGATCTCCATGTCCTCATATCCACC
CCCTTCCACCCAGCCTATGTTACAGCAGAGAGGATCAAGAAAGCCAAAAA
CTTGCAACTGCTTCTCACAGCGGGGATTGGCTCTGATCACGTAGATCTGA
AGGCAGCTGCAGAAGCTGGCTTGACTGTTGCTGAGGTTACAGGAAGCAAT
GTAGTGTCTGTTGCCGAAGACGAGCTAATGAGAATTCTTATTCTTGTCCG
GAATTTCTTGCCTGGCCACCACCAAGTTATTACTGGAGATTGGAATGTTG
CAGGTATTGCTTACAGAGCTTATGATCTTGAAGGGAAGACGGTGGGAACT
ATTGGTGCAGGGCGTATTGGCAGGCTCTTACTCCAACGACTGAAACCATT
CAACTGCAATCTCCTATATCATGATCGAGTCAAGATAGACCCAGAATTGG
AGAAGCAGACTGGAGCAAAATTTGAGGAGGATCTTGATGCAATGCTTCCA
AAGTGTGACATAATTGTCATAAACATGCCTCTTACAGAGAAGACAAGAGG
GATGTTCGACAAAGATAGGATTGCAAAATTGAAGAAGGGAGTCCTGATTG
TTAACAATGCTCGAGGAGCAATTATGGACACACAGGCAGTTGCAGATGCT
TGCTCAAGTGGACACATTGCAGGTTACAGTGGAGATGTCTGGTATCCACA
ACCAGCTCCAAAGGACCATCCATGGCGTTTCATGCCAAATCAAGCTATGA
CACCTCATATTTCTGGTACCACCATTGATGCACAGTTGCGATATGCTGCT
GGAGTCAAGGATATGCTTGACAGGTACTTCAAGGGTGAAGAATTTCCTGC
ACAAAATTACATTGTCAAGGAAGGTGAACTAGCTCCTCAGTACCGATGA
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protein sequence of Tc04v2_p000680.1

>Tc04v2_p000680.1 ID=Tc04v2_p000680.1|Name=Tc04v2_p000680.1|organism=Theobroma cacao|type=polypeptide|length=383bp
MAMKQVASSAIKALANSGSSSVLTRQLHASPGSKKIVGVFYKANEYYEKN
PNFVGCVEGALGLREWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLIST
PFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAEAGLTVAEVTGSN
VVSVAEDELMRILILVRNFLPGHHQVITGDWNVAGIAYRAYDLEGKTVGT
IGAGRIGRLLLQRLKPFNCNLLYHDRVKIDPELEKQTGAKFEEDLDAMLP
KCDIIVINMPLTEKTRGMFDKDRIAKLKKGVLIVNNARGAIMDTQAVADA
CSSGHIAGYSGDVWYPQPAPKDHPWRFMPNQAMTPHISGTTIDAQLRYAA
GVKDMLDRYFKGEEFPAQNYIVKEGELAPQYR*
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