Tc04v2_t000230.1

Overview
NameTc04v2_t000230.1
Unique NameTc04v2_t000230.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2961
Properties
Property NameValue
ProductGPI ethanolamine phosphate transferase 1, transcript variant X1
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
NoteGPI ethanolamine phosphate transferase, putative isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600701
GenbankXM_018119526.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g000230Tc04v2_g000230Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p000230.1Tc04v2_p000230.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto199265auto199265Theobroma cacaoexon
exon-auto199266auto199266Theobroma cacaoexon
exon-auto199267auto199267Theobroma cacaoexon
exon-auto199268auto199268Theobroma cacaoexon
exon-auto199269auto199269Theobroma cacaoexon
exon-auto199270auto199270Theobroma cacaoexon
exon-auto199271auto199271Theobroma cacaoexon
exon-auto199272auto199272Theobroma cacaoexon
exon-auto199273auto199273Theobroma cacaoexon
exon-auto199274auto199274Theobroma cacaoexon
exon-auto199275auto199275Theobroma cacaoexon
exon-auto199276auto199276Theobroma cacaoexon
exon-auto199277auto199277Theobroma cacaoexon
exon-auto199278auto199278Theobroma cacaoexon
exon-auto199279auto199279Theobroma cacaoexon
exon-auto199280auto199280Theobroma cacaoexon
exon-auto199281auto199281Theobroma cacaoexon
exon-auto199282auto199282Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto199283auto199283Theobroma cacaoCDS
CDS-auto199284auto199284Theobroma cacaoCDS
CDS-auto199285auto199285Theobroma cacaoCDS
CDS-auto199286auto199286Theobroma cacaoCDS
CDS-auto199287auto199287Theobroma cacaoCDS
CDS-auto199288auto199288Theobroma cacaoCDS
CDS-auto199289auto199289Theobroma cacaoCDS
CDS-auto199290auto199290Theobroma cacaoCDS
CDS-auto199291auto199291Theobroma cacaoCDS
CDS-auto199292auto199292Theobroma cacaoCDS
CDS-auto199293auto199293Theobroma cacaoCDS
CDS-auto199294auto199294Theobroma cacaoCDS
CDS-auto199295auto199295Theobroma cacaoCDS
CDS-auto199296auto199296Theobroma cacaoCDS
CDS-auto199297auto199297Theobroma cacaoCDS
CDS-auto199298auto199298Theobroma cacaoCDS
CDS-auto199299auto199299Theobroma cacaoCDS
CDS-auto199300auto199300Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t000230.1 ID=Tc04v2_t000230.1|Name=Tc04v2_t000230.1|organism=Theobroma cacao|type=mRNA|length=2961bp
ATGGGTAGCGATGGGATCTTGGGCAACAGAGACTCAAAGCAGAGCAAAGC
AAGTATACCCAAACGAAGAAAATGGGTGAAGAGAAGAGAAACATGGCTGG
TGATCCTTGGTGTGATCCTCCATGCTGTTTACATGTTGAGCATCTTCGAC
ATCTACTTCAAAACACCCATTGTTCACGGCATGGATCTTGTCTCCCCTCG
CTTCTTGGCTCCCGCTAAACGCCTCGTTCTCCTTGTTGCGGATGGTTTAC
GTGCTGATAAGTTTTTTGAGCCGGATTCAGAAGGAAATTTTAGAGCACCA
TTTTTAAGAAGCGTGATTAAAAATCAAGGTAAATGGGGAGTATCTCATGC
TCGGCCTCCAACAGAGTCAAGGCCAGGACATGTTGCTATAATTGCTGGTT
TTTATGAGGACCCTAGTGCAGTTACAAAAGGATGGAAAGCTAATCCAGTA
GAATTTGATTCAGTTTTTAATCGGAGCCGGCATACATTTTCTTATGGTAG
CCCTGATATTGTTCCAATATTTTGTGGCGCTTTGCCACACAGCACTTGGA
ATACCTACCCTCATGAGTTTGAAGACTTTGCAACTGATGCATCCTTTTTG
GACGAGTGGTCTTTTGATCAATTTCAGAGCCTTCTGAACAAGTCCAATGA
AGACCCAAAGTTGAAAAGGTTACTACAACAAGATAATCTTGTTATATTTC
TGCATCTACTTGGTTGTGATTCAAATGGTCATGCACATCGTCCCTTTTCA
TCCATTTATCTCAACAATGTAAAAGTTGTTGATCGTATTGCTGAACGTGT
TTATAATCTTCTGGAGAGTTACTACAAGGACAATCGTACATCATATATTT
TCACAGCAGATCATGGAATGAGTGACAAAGGAAGTCATGGGGATGGCCAT
CCTTCAAACACTGATACCCCTCTAGTTGCTTGGGGAGCAGGCATTAAACA
TCCCAAGCCAATCACGAGAAGAGACCACTCTGATCATGTTCTTCGGTTTG
TTGATGAACATTTGCATGACACACCAACACCTAAAGAATGGGGCCTTGAT
GGCATTGAAAGGGTTGATGTTAATCAAGCTGATATTGCACCCCTCATGTC
AACTCTTCTTGGTTTGCCTTGTCCAGTCAATTCAGTTGGGAATTTACCCC
TTTCTTATGTTGACATGAAAGAGGAAGAAGAAGTTGAAGCTGTGGTAGCT
AACACAAAGCAGATTCTTAACCAGTTTCTGCGCAAATCACAAATAAAGCG
ATCACATTCACTATATTTCAAGCCTTTCAAGCAACTTGCTCAATATTCCT
CTATGTTGAATCAAATTGAGGGTTTGCTAATTGCTAGAGACTATAAAGCT
GCCATGCAGCTATCAGAAAATCTCAGAAGCTTGGCACTGGATGGACTTCA
TTATTTTCAAACTTATGATTGGCTGAAGCTGATGACCATAATTACTCTTG
GATATATCGGTTGGATGGTCTTTCTTGTTCTTCATGTTCTGCAAGCTTAT
ACTTCATTGTTAGGAGATACATATAGAAAGGAGGAAGCATTTCGCCAGCA
ATATAATACAGGAAAAGTTAACCTATGGGGCTGTCTGTTTATGGGAGTAC
TCAGTGTTCTACTTTTTCTGGAGCGCTCCCCTCCTCTTTACCATGCATAC
TTTGCCATGACAGTATTTCTCTGGACACAAATCCTTAATGAGTATCAGTT
TATAAAAGCACTATGGAGACACTTAAGTGGGAGGAAATTCAACTATGTCA
TTAAACTTCTGGTCACTGGTGTGGTGTCACTAATCATTCTGGAGTTCCTG
GTGCATAGCTTCACTGAAAGAAAACTCTACACTTGGTGCTTCCTGGTAGT
GGGAGCCATAGCTTCTATGTATCTTTACAATTTAATTCCTTGGAGATCCA
GGATTCCAGTTTTTGTTTGCCTTACTTGTTGGTTCCTGTCTCTATTTACT
TTAATGCCAGCAGAAATTCCCGATAATAATAAGTTGGTAATTGCAAGTGG
AGGGATGATTATCGTGATAGGATTAACTGCAAAGTGGCTGGACCTGCATG
CTGATGGGAATAAATATTGGTTAGGTATCTGCAAGCATGAAATAAAACAA
CCCAGGTTCCCTATGCTCTTTCTCTTCCAGGCTCTTTTGGTCGGGTTATC
GTCAGTAATGGTGTTTTTATCTACCTCTCATAGAACAGAGAAGCAAGAAC
TACACACAGTACATCAATTGATGAACTGGTCCATTGCGGGTTGGTCAATG
GTCCTCCCATTGTTTTCCGATAATGGTTTCTTGTCTAGGCTCAATTCTAT
ATTTCTTGGTTTCGCACCAACATTCCTTCTGCTATCTATTGGATATGAAG
CTGTCTTCTATGGTGCACTTGGTCTTGTACTAATGGCATGGATACTGTTT
GAAAACTCACTTCTTTACTTAAGTAAAGTGAAAAAATCTTCTGCTTCTAG
AAAGAATTTGGAAGAACATTTCTTTCTCGAAAATGAAGTTAGATATTTGC
AGCTGTCTGATGTGAGAATTCCATTAACCTTTATGGTTTTATTTAATGTG
GCCTTCTTTGGGACGGGAAATTTTGCAAGTATTGCAAGTTTTGAGATTTC
ATCTGTCTACAGGTTCATCACTGTCTTCAGTCCCTTTCTGATGGCAGCCC
TCCTCATCTTCAAGTTATTCATACCATTCATGCTTGTCATATGTGCATTC
AGTGCAACAACCAAACTACTCCAAATTCCACGATTGGGATGCTATTTCCT
TGTGATTTTGTTTTCAGACGTGATGACCATCCACTTCTTTTTCCTGGTGA
GGAACACAGGAAGCTGGATGGAAATTGGTAATAGCATCAGCCATTTTGGA
ATTGTGAGTGCACAAGTTGTGTTTGTGCTACTACTTTTTGCGCTCACAAA
TATATACACAAAGGATATCCAAATTAGATCAGCTAGCCGAGCCTCTTGGA
AAGCAATGTGA
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protein sequence of Tc04v2_p000230.1

>Tc04v2_p000230.1 ID=Tc04v2_p000230.1|Name=Tc04v2_p000230.1|organism=Theobroma cacao|type=polypeptide|length=987bp
MGSDGILGNRDSKQSKASIPKRRKWVKRRETWLVILGVILHAVYMLSIFD
IYFKTPIVHGMDLVSPRFLAPAKRLVLLVADGLRADKFFEPDSEGNFRAP
FLRSVIKNQGKWGVSHARPPTESRPGHVAIIAGFYEDPSAVTKGWKANPV
EFDSVFNRSRHTFSYGSPDIVPIFCGALPHSTWNTYPHEFEDFATDASFL
DEWSFDQFQSLLNKSNEDPKLKRLLQQDNLVIFLHLLGCDSNGHAHRPFS
SIYLNNVKVVDRIAERVYNLLESYYKDNRTSYIFTADHGMSDKGSHGDGH
PSNTDTPLVAWGAGIKHPKPITRRDHSDHVLRFVDEHLHDTPTPKEWGLD
GIERVDVNQADIAPLMSTLLGLPCPVNSVGNLPLSYVDMKEEEEVEAVVA
NTKQILNQFLRKSQIKRSHSLYFKPFKQLAQYSSMLNQIEGLLIARDYKA
AMQLSENLRSLALDGLHYFQTYDWLKLMTIITLGYIGWMVFLVLHVLQAY
TSLLGDTYRKEEAFRQQYNTGKVNLWGCLFMGVLSVLLFLERSPPLYHAY
FAMTVFLWTQILNEYQFIKALWRHLSGRKFNYVIKLLVTGVVSLIILEFL
VHSFTERKLYTWCFLVVGAIASMYLYNLIPWRSRIPVFVCLTCWFLSLFT
LMPAEIPDNNKLVIASGGMIIVIGLTAKWLDLHADGNKYWLGICKHEIKQ
PRFPMLFLFQALLVGLSSVMVFLSTSHRTEKQELHTVHQLMNWSIAGWSM
VLPLFSDNGFLSRLNSIFLGFAPTFLLLSIGYEAVFYGALGLVLMAWILF
ENSLLYLSKVKKSSASRKNLEEHFFLENEVRYLQLSDVRIPLTFMVLFNV
AFFGTGNFASIASFEISSVYRFITVFSPFLMAALLIFKLFIPFMLVICAF
SATTKLLQIPRLGCYFLVILFSDVMTIHFFFLVRNTGSWMEIGNSISHFG
IVSAQVVFVLLLFALTNIYTKDIQIRSASRASWKAM*
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