Tc04v2_t000080.4

Overview
NameTc04v2_t000080.4
Unique NameTc04v2_t000080.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length489
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productprobable gluconokinase, transcript variant X4
NoteGluconokinase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600678
GenbankXM_007031275.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g000080Tc04v2_g000080Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p000080.4Tc04v2_p000080.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto199016auto199016Theobroma cacaoexon
exon-auto199017auto199017Theobroma cacaoexon
exon-auto199018auto199018Theobroma cacaoexon
exon-auto199019auto199019Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto199020auto199020Theobroma cacaoCDS
CDS-auto199021auto199021Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t000080.4 ID=Tc04v2_t000080.4|Name=Tc04v2_t000080.4|organism=Theobroma cacao|type=mRNA|length=489bp
ATGTTGGCCAAAGTTTTGAACTGTGGCTTTCTTGATGCTGATGATTTCCA
TCCACTATCAAATAAAGAAAAGATGTGCCAAGGTGTTCCCCTCTCAGAGG
AGGATCGGATTCCGTGGCTGGAAATGCTAAGGGATGTTCTAAAAGAGAAC
TTAGTAGTTGGAAAAACTGTGGTACTTGGGTGTTCTTCTCTGCAGAAACA
TTACAGAGAAATTCTAAGATGTGCTGATGCTGCTTATGAACATGGCAGCT
ATGCCAGTAAGGTGCAGTTTGTTCTGTTGGATGCCCGGGCTGAGGTGCTT
GCTGGTCGGCTTGAGAAGAGAGCTGCAGAAGGGAATCATTTCATGCCAGT
CACGCTTCTGCAATCTCAACTAGACTTACTTCACATAGATGATGCTGAAG
GGATATTCAAGGTTGATGCTACTTTAAGCCCTCAAGTCATTGTAAGCACA
ATACAAGCATTGTTGTTGTCTAAACAAGCCATAGATTAA
back to top

protein sequence of Tc04v2_p000080.4

>Tc04v2_p000080.4 ID=Tc04v2_p000080.4|Name=Tc04v2_p000080.4|organism=Theobroma cacao|type=polypeptide|length=163bp
MLAKVLNCGFLDADDFHPLSNKEKMCQGVPLSEEDRIPWLEMLRDVLKEN
LVVGKTVVLGCSSLQKHYREILRCADAAYEHGSYASKVQFVLLDARAEVL
AGRLEKRAAEGNHFMPVTLLQSQLDLLHIDDAEGIFKVDATLSPQVIVST
IQALLLSKQAID*
back to top