Tc03v2_t027130.1

Overview
NameTc03v2_t027130.1
Unique NameTc03v2_t027130.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1107
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
ProductSH3 domain-containing protein 1
NoteSH3 domain-containing protein 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606950
GenbankXM_007040860.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g027130Tc03v2_g027130Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p027130.1Tc03v2_p027130.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto198096auto198096Theobroma cacaoexon
exon-auto198097auto198097Theobroma cacaoexon
exon-auto198098auto198098Theobroma cacaoexon
exon-auto198099auto198099Theobroma cacaoexon
exon-auto198100auto198100Theobroma cacaoexon
exon-auto198101auto198101Theobroma cacaoexon
exon-auto198102auto198102Theobroma cacaoexon
exon-auto198103auto198103Theobroma cacaoexon
exon-auto198104auto198104Theobroma cacaoexon
exon-auto198105auto198105Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto198106auto198106Theobroma cacaoCDS
CDS-auto198107auto198107Theobroma cacaoCDS
CDS-auto198108auto198108Theobroma cacaoCDS
CDS-auto198109auto198109Theobroma cacaoCDS
CDS-auto198110auto198110Theobroma cacaoCDS
CDS-auto198111auto198111Theobroma cacaoCDS
CDS-auto198112auto198112Theobroma cacaoCDS
CDS-auto198113auto198113Theobroma cacaoCDS
CDS-auto198114auto198114Theobroma cacaoCDS
CDS-auto198115auto198115Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t027130.1 ID=Tc03v2_t027130.1|Name=Tc03v2_t027130.1|organism=Theobroma cacao|type=mRNA|length=1107bp
ATGGAAGCTATCAAGAAGCAAGCTACCAAGCTCAGAGAGCAAGTTGCCAA
GCAGCAGCAAGCAGTGCTTCGGCATCTTGGCCATTTTAGTAATGAAGACA
TTACAGTTGATGAAGCTGAGCTTCAATGTCATCAAAAGCTGCAAGATCTA
TACATTTCTACAAAGGCAGCTAAGCATTTGCAGCGGAATATTGTCCGTGG
CATAGAAGGTTTTATTGCAACAAGCTCAAAGCTGCTAGAAATAGCTAGGA
AGTTGGCTGATGATTGTTGCAAATATGGAGCTGAGAGTCAAAGCTCTGAT
TCTTTTCTTGCAAGAGCTGCCCTTCAGTTTGGTAAGTCACATAAATCAAT
GGAAGATGAAAGGGAGACCTTGCTTGGGATCCTTGGTGAACAGGTTTCTG
AGCCACTACGGGCATTAATTACAGGTGCTCCTTTGGAGGATGCTCGGCAC
TTGACCCACCGTTATGACAGACTCCGCCAAGAGGTTGAAGCTCAGGCAGC
AGATGTATTAAGGCGGAGATCAAAGACCAGGGAATCTGATATATCTGCAG
AAAGCTACATGAAGCTTAAACAGGCAGAAGCAAGATTGACTGAACTTAAA
GCCTCAATGATGGTACTAGGAAGAGAAGCAACTGCTGCCATGCTATCAGT
TGAGGATCAGCAGCAAAAGATTACTTTCCAGCGGCTTCTTGCTATGGTTG
ATGCTGAAAAATCTTATCATCGGCGTATTCTTGCTATTTTAGAGAAGCTA
TATGCTGAGATGATTCTGGAGGAGCAGTCGAATGAGTCATTGAACTCAGT
GACTTTGCAGAGAGAGGTGAATGTTGCCCTTGCAGATGATAACACTTGTT
CAAATGGATCTAAGGCTCAGATAAACAATCAAAGCGATGTATATTTCATA
GCAAAGGTTGTACACCCATTTGATGCTCAAGCCGATGGGGAGTTAAGCTT
AGCAGTTGGTGATTATGTTGTGGTTCGCCAGGTGGGTCCTACTGGATGGT
CTGAAGGAGAATGCAAGGGCAAGGCTGGGTGGTTTCCCTCTGCTTATGTC
GAAAGACAAGAGAAAGCTCCAGCAAGCAAGATAAGTGAAGCAAACTCGGC
AGCCTGA
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protein sequence of Tc03v2_p027130.1

>Tc03v2_p027130.1 ID=Tc03v2_p027130.1|Name=Tc03v2_p027130.1|organism=Theobroma cacao|type=polypeptide|length=369bp
MEAIKKQATKLREQVAKQQQAVLRHLGHFSNEDITVDEAELQCHQKLQDL
YISTKAAKHLQRNIVRGIEGFIATSSKLLEIARKLADDCCKYGAESQSSD
SFLARAALQFGKSHKSMEDERETLLGILGEQVSEPLRALITGAPLEDARH
LTHRYDRLRQEVEAQAADVLRRRSKTRESDISAESYMKLKQAEARLTELK
ASMMVLGREATAAMLSVEDQQQKITFQRLLAMVDAEKSYHRRILAILEKL
YAEMILEEQSNESLNSVTLQREVNVALADDNTCSNGSKAQINNQSDVYFI
AKVVHPFDAQADGELSLAVGDYVVVRQVGPTGWSEGECKGKAGWFPSAYV
ERQEKAPASKISEANSAA*
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