Tc03v2_t026790.2

Overview
NameTc03v2_t026790.2
Unique NameTc03v2_t026790.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1911
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productarabinosyltransferase XEG113, transcript variant X1
NoteArabinosyltransferase XEG113
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606913
GenbankXM_018118202.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g026790Tc03v2_g026790Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p026790.2Tc03v2_p026790.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto197354auto197354Theobroma cacaoexon
exon-auto197355auto197355Theobroma cacaoexon
exon-auto197356auto197356Theobroma cacaoexon
exon-auto197357auto197357Theobroma cacaoexon
exon-auto197358auto197358Theobroma cacaoexon
exon-auto197359auto197359Theobroma cacaoexon
exon-auto197360auto197360Theobroma cacaoexon
exon-auto197361auto197361Theobroma cacaoexon
exon-auto197362auto197362Theobroma cacaoexon
exon-auto197363auto197363Theobroma cacaoexon
exon-auto197364auto197364Theobroma cacaoexon
exon-auto197365auto197365Theobroma cacaoexon
exon-auto197366auto197366Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto197367auto197367Theobroma cacaoCDS
CDS-auto197368auto197368Theobroma cacaoCDS
CDS-auto197369auto197369Theobroma cacaoCDS
CDS-auto197370auto197370Theobroma cacaoCDS
CDS-auto197371auto197371Theobroma cacaoCDS
CDS-auto197372auto197372Theobroma cacaoCDS
CDS-auto197373auto197373Theobroma cacaoCDS
CDS-auto197374auto197374Theobroma cacaoCDS
CDS-auto197375auto197375Theobroma cacaoCDS
CDS-auto197376auto197376Theobroma cacaoCDS
CDS-auto197377auto197377Theobroma cacaoCDS
CDS-auto197378auto197378Theobroma cacaoCDS
CDS-auto197379auto197379Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t026790.2 ID=Tc03v2_t026790.2|Name=Tc03v2_t026790.2|organism=Theobroma cacao|type=mRNA|length=1911bp
ATGGGGGGATGGAGAAACGCAGTTCAAGAAGCTGCTGGTTCCAAACCGCT
GTTTCTGACCATATACGCCACCGTTATAGTGGGGATAGTGGTGTCTTCGT
TTTACGTATTCTCTGCCATTTACTCTCCATCCGCTTCCACCACTCAGTCT
GTCTCTACTTCTTGGCTTTCATCTCCTTCTCTCTCCCAAAATGGGGTTTC
TCTTTCCAGTGGTCAGTCAATCAACATTTCTCAACCTTCAGGAATTGCAT
CACAACCTGGCAGCAACAACCTGAGACCTATTTGGGAGGCTCCACCTCGT
ACTTCAAAAATGCCACCTTTAAAGTTCTTTAGTCTAACAAAAGAACTGGT
CGAAGAAAGGGCAAAAGATAATGTCATTATAGTCACTTTTGGTAACTTTG
CATTTATGGATTTCATCCTGACTTGGGTTAAACACTTGACAGATCTTGGT
GTTTCTAATCTTCTTGTTGGTGCTATGGACACCAAACTTTTGAAGGCTTT
GTATTGGAAAGGTATTCCAGCCTTCGATATGGGCAGCCATATGAGCACAA
TTGATGTTGGCTGGGGCTCTCCTACATTTCATAAAATGGGGAGAGAGAAA
GTCTTACTTATAAATGCTATACTTCCTTTTGGTTATGAGCTATTGATGTG
TGATACAGACATGGTGTGGTTGAAGAATCCACTTCCATATCTTGCTCGGT
ACCCGGATGCAGACGTCTTAACTTCAAGTGACCAAGTTGTGCCAACAGTT
GTTGATGACAGATTGGCTGACTGGAAACAAGTTGGTGCCGCGTACAATAT
AGGAATTTTCCACTGGCGGCCAACAGAGCCTGCAATAAAACTGGCAAAAG
AATGGAAAGATATGCTTTTAGCTGATGATAAGATATGGGATCAGAATGGA
TTTAATGAACTTGTACGTAGGCAGTCAGGGCCGGCCGTTGATGACGATAG
TGGACTTTTTTATGCTTTTGATGGAAATCTCAAGCTGGGAATTCTGCCAG
AAAGTATATTTTGTAGTGGACACACTTATTTTGTTCAGGCCATGTATGAA
CAACTTAGGCTGGAGCCATACGCTTTGCACACCACGTTCCAGTATGCTGG
TACTGAGGGAAAGCGTCATCGACTGCGGGAGGCCATGGTTTTCTATGATC
CACCAGAGTACTATGATGCGCCAGGAGGATTCTTGTCATTTAAACCTTCT
ATTCCAAAGAGCTTGTTACTGGAGGGGGAGAATAATCTCGAATCACACTT
CTCTCTTATTAATTACCAAATGAAACAAATAAGGTCAGCGCTTGCTATTG
CTTCATTGCTGAACCGTACGCTGGTTATGCCTCCACTATGGTGCAGGTTG
GATAGGCTGTGGTTTCCACATCCTGGAGTTTTGGTGGGGTCAATGACTAG
ACAACCTTTTCTCTGCCCTTTGGACCATGTCTTTGAGGTAAATGTCATGT
TGAAAGACCTTCCAGTGGAGGAATTTGGTCCGGCAATCAACATCAGAGAG
TACTCTTTTCTGAACAATCCATTGTTGCCCCAACAAGTAAAGGAGTCGTG
GCTTGATGTTCAGCTTTGTCAAGAAGGAACTGAAGATTGCCATGCATCAA
GCAACACAAGTAGACCAGGTCTTTTAAGATTTCCAAAACACAGCGGTGAA
GAAACGTTCAAGACAGTGTTCTCTGCATTCAAGGATGTCAAAGTAATTCA
ATTCTCTTCCATGCAAGATGCTTTTCTTGGTTTCTCTGACAAGACAAGAG
AGGAGAAATTCAGGAATCGTGTGAAGCGGTATGTAGGTATATGGTGCTGT
GTTGACAGCCACACTCCCGGACACATATATTATGACATGTACTGGGATGA
GAAACCAGGCTGGAAACCTGCCCCACCTCAAACCCCAGAGGATGATCATC
CGCCATTCTGA
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protein sequence of Tc03v2_p026790.2

>Tc03v2_p026790.2 ID=Tc03v2_p026790.2|Name=Tc03v2_p026790.2|organism=Theobroma cacao|type=polypeptide|length=637bp
MGGWRNAVQEAAGSKPLFLTIYATVIVGIVVSSFYVFSAIYSPSASTTQS
VSTSWLSSPSLSQNGVSLSSGQSINISQPSGIASQPGSNNLRPIWEAPPR
TSKMPPLKFFSLTKELVEERAKDNVIIVTFGNFAFMDFILTWVKHLTDLG
VSNLLVGAMDTKLLKALYWKGIPAFDMGSHMSTIDVGWGSPTFHKMGREK
VLLINAILPFGYELLMCDTDMVWLKNPLPYLARYPDADVLTSSDQVVPTV
VDDRLADWKQVGAAYNIGIFHWRPTEPAIKLAKEWKDMLLADDKIWDQNG
FNELVRRQSGPAVDDDSGLFYAFDGNLKLGILPESIFCSGHTYFVQAMYE
QLRLEPYALHTTFQYAGTEGKRHRLREAMVFYDPPEYYDAPGGFLSFKPS
IPKSLLLEGENNLESHFSLINYQMKQIRSALAIASLLNRTLVMPPLWCRL
DRLWFPHPGVLVGSMTRQPFLCPLDHVFEVNVMLKDLPVEEFGPAINIRE
YSFLNNPLLPQQVKESWLDVQLCQEGTEDCHASSNTSRPGLLRFPKHSGE
ETFKTVFSAFKDVKVIQFSSMQDAFLGFSDKTREEKFRNRVKRYVGIWCC
VDSHTPGHIYYDMYWDEKPGWKPAPPQTPEDDHPPF*
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