Tc03v2_t026060.2

Overview
NameTc03v2_t026060.2
Unique NameTc03v2_t026060.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1530
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productphosphomevalonate kinase, transcript variant X1
NotePhosphomevalonate kinase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606835
GenbankXM_018117917.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g026060Tc03v2_g026060Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p026060.2Tc03v2_p026060.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto195869auto195869Theobroma cacaoexon
exon-auto195870auto195870Theobroma cacaoexon
exon-auto195871auto195871Theobroma cacaoexon
exon-auto195872auto195872Theobroma cacaoexon
exon-auto195873auto195873Theobroma cacaoexon
exon-auto195874auto195874Theobroma cacaoexon
exon-auto195875auto195875Theobroma cacaoexon
exon-auto195876auto195876Theobroma cacaoexon
exon-auto195877auto195877Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto195878auto195878Theobroma cacaoCDS
CDS-auto195879auto195879Theobroma cacaoCDS
CDS-auto195880auto195880Theobroma cacaoCDS
CDS-auto195881auto195881Theobroma cacaoCDS
CDS-auto195882auto195882Theobroma cacaoCDS
CDS-auto195883auto195883Theobroma cacaoCDS
CDS-auto195884auto195884Theobroma cacaoCDS
CDS-auto195885auto195885Theobroma cacaoCDS
CDS-auto195886auto195886Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t026060.2 ID=Tc03v2_t026060.2|Name=Tc03v2_t026060.2|organism=Theobroma cacao|type=mRNA|length=1530bp
ATGGTGATTTATAGAGTTGCTTCTGCTCCGGGGAAGGTGTTGATGACTGG
GGGGTACTTGATTTTGGAGAGGCCAAATGCTGGGATTGTTCTGAGTACAA
ATGCCCGTTTTTACGCTATTGTGAAGCCAATTCATGAAGATGTCAAGCCT
GAAAGCTGGGCATGGGCATGGACCGATGTCAAACTAACATCTCCTCAGCT
TTCCAGAGAAAGCACATACAAATTGTCTATGAAGCATTTAACGCTTCAGT
GTGTCTCTTCAAGTGAATCAAGGAACCCTTTTGTAGAAAATGCAATTCAA
TATGCTGTAGCAGCTGGACGTGCAACTCTTGACAAGAATAAGAAGGATGC
ATTAGACAAACTACTCTTACAAGGTCTTGATATCACAATCTTAGGTTGCA
ACGACTTTTACTCTTATCGGAATCAGATTGAAGCTCATGGACTTCCTTTG
ACACCAGATGCGTTGGCTGCTCTACCACCTTTTACATCAATTACTTTCAA
TGCTGAGGAATCAAATGGAGGAAATTGTAAACCTGAAGTTGCGAAAACTG
GATTGGGTTCATCAGCAGCAATGACAACTGCTGTAGTTGCTGCTTTACTT
CATTACCTTGGTGTTGTTAACCTTTCCGCCTTGTCTGAAGATCCACACCA
GCAAAATTCCATGGATCTTGATGTCGTGCATATGATAGCTCAAAGTGCCC
ATTGTATTGCCCAAGGAAAAGTTGGCAGTGGCTTCGATGTGAGTTCTGCA
GTCTATGGGAGTCAGCGTTATGTTCGTTTTTCACCAAAAGTGCTTTCTGC
TGCTCAGGTTGCAGTGCAAGGAATGCCATTAGAGGAAGTCATTGGCAACA
TTCTAAATGGAGAATGGGACCATAAGAGGACTAAATTCTCTTTGCCACCA
TTAATGACACTTTTACTAGGAGAACCCGGAACTGGTGGATCATCGACACC
ATCAATGGTAGGTGCTGTTAAAAAATGGCAGAAGGCTGATCCTGAAAAAT
CCCAAGAAACATGGAGAAAGCTGGCTGAGGCTAATTCAGAACTTGAGAAA
CAACTCGACATGTTAAGCAAATTAGCCAAAGAACATTGGGATGCTTACAA
ATGTGTGATTGATAGCTGTAGCAGGCTTAAACCAGAAAAGTGGATGGAGG
GAGTTACTGAGCCAATCAAAGAAGCAGTTGTTAAAGCATTGCTACAGGCA
AGGGATGCTATGCTTGGGATCAGAAATCACATGCGACAAATGGGAGAGGC
AGCAGGCATTCCGATAGAACCCAAATCACAGACTCAACTTTTGGATGCTA
CTATGAATATGGAAGGAGTTTTGTTGGCTGGGGTTCCTGGAGCAGGTGGA
TTTGATGCAATCTTTGCTGTTACCTTGGGGGATTCCAGCAGCAATGTGAC
AAATGCATGGAGTTCACACAATGTCCTGGGCTTGTTAGTTAGGGAAGATC
CTCAAGGTGTTTCTTTAGAAAGTGGTGATCCACGAAGCTGGGAAATTACA
TCTGGGGTTTCTTCAGTCCATATCAAGTGA
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protein sequence of Tc03v2_p026060.2

>Tc03v2_p026060.2 ID=Tc03v2_p026060.2|Name=Tc03v2_p026060.2|organism=Theobroma cacao|type=polypeptide|length=510bp
MVIYRVASAPGKVLMTGGYLILERPNAGIVLSTNARFYAIVKPIHEDVKP
ESWAWAWTDVKLTSPQLSRESTYKLSMKHLTLQCVSSSESRNPFVENAIQ
YAVAAGRATLDKNKKDALDKLLLQGLDITILGCNDFYSYRNQIEAHGLPL
TPDALAALPPFTSITFNAEESNGGNCKPEVAKTGLGSSAAMTTAVVAALL
HYLGVVNLSALSEDPHQQNSMDLDVVHMIAQSAHCIAQGKVGSGFDVSSA
VYGSQRYVRFSPKVLSAAQVAVQGMPLEEVIGNILNGEWDHKRTKFSLPP
LMTLLLGEPGTGGSSTPSMVGAVKKWQKADPEKSQETWRKLAEANSELEK
QLDMLSKLAKEHWDAYKCVIDSCSRLKPEKWMEGVTEPIKEAVVKALLQA
RDAMLGIRNHMRQMGEAAGIPIEPKSQTQLLDATMNMEGVLLAGVPGAGG
FDAIFAVTLGDSSSNVTNAWSSHNVLGLLVREDPQGVSLESGDPRSWEIT
SGVSSVHIK*
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