Tc03v2_t026050.1

Overview
NameTc03v2_t026050.1
Unique NameTc03v2_t026050.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length822
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 14 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productsignal recognition particle receptor subunit beta, transcript variant X1
NoteSignal recognition particle receptor subunit beta isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606834
GenbankXM_007040670.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g026050Tc03v2_g026050Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p026050.1Tc03v2_p026050.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto195816auto195816Theobroma cacaoexon
exon-auto195817auto195817Theobroma cacaoexon
exon-auto195818auto195818Theobroma cacaoexon
exon-auto195819auto195819Theobroma cacaoexon
exon-auto195820auto195820Theobroma cacaoexon
exon-auto195821auto195821Theobroma cacaoexon
exon-auto195822auto195822Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto195823auto195823Theobroma cacaoCDS
CDS-auto195824auto195824Theobroma cacaoCDS
CDS-auto195825auto195825Theobroma cacaoCDS
CDS-auto195826auto195826Theobroma cacaoCDS
CDS-auto195827auto195827Theobroma cacaoCDS
CDS-auto195828auto195828Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t026050.1 ID=Tc03v2_t026050.1|Name=Tc03v2_t026050.1|organism=Theobroma cacao|type=mRNA|length=822bp
ATGGAAGGGATGGAACAGTGGAAGGATCAATTAGAGCAGTTGAAGAGTCA
ATTGGAGCCATGGAAGAATCAATTGGAGCAGTGGTTGCATCAAGCAATTG
AGTATTTGAACCAAATACCCCCGATTCAACTTTATGCTGCTGTTGCTGTC
TTGCTCGTTTCTACCCTCTTGCTTTTGTCCTTCCACTTGTTCAAACGCAC
AAAATCTAATAGCATTGTACTCACTGGCCTTAGTGGGAGTGGAAAAACTG
TTCTGTTCTATCAGCTTCGTGATGGTTCCTCACATCAGGGCACTGTTACG
TCCATGGAACCAAATGAGGGCACTTTTGTGCTAAATTCAGAAAGTTATAA
GAAGGGCAAAACCAAGCCTGTCCATCTTGTTGATGTTCCTGGGCATTCTC
GTCTGCAGCCCAAACTGGATGAGTTTTTGCCTCAAGCAGCTGGCATTGTG
TTTGTTGTTGATGCTTTGGAGTTCTTACCAAACTGCCGTTTAGCTTCAGA
GTACCTGTATGATATTTTGACCAAGGCAAGTGTGGTCAAGAAGAAAATTC
CAGTTCTTATCTGTTGTAATAAAACCGATAAAGTGACAGCACATACCAAG
GAGTTCATCAGAAAGCAAATGGAAAAGGAAATTGATAAACTGCGGGCGTC
AAGAAGTGCAATATCAGCAGCTGATATTTCAAATGACTTCACTCTGGGGG
AACCTGGAGAAGCATTTGCATTCTCTCAGTGCAGAAACAAAGTTACCGTC
GCTGAAGCTTCTGGTTTGACCGGGGAAGTAGCACAAGTAGAACAGTTTAT
CAGGGAACATGTAAAGCCATAG
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protein sequence of Tc03v2_p026050.1

>Tc03v2_p026050.1 ID=Tc03v2_p026050.1|Name=Tc03v2_p026050.1|organism=Theobroma cacao|type=polypeptide|length=274bp
MEGMEQWKDQLEQLKSQLEPWKNQLEQWLHQAIEYLNQIPPIQLYAAVAV
LLVSTLLLLSFHLFKRTKSNSIVLTGLSGSGKTVLFYQLRDGSSHQGTVT
SMEPNEGTFVLNSESYKKGKTKPVHLVDVPGHSRLQPKLDEFLPQAAGIV
FVVDALEFLPNCRLASEYLYDILTKASVVKKKIPVLICCNKTDKVTAHTK
EFIRKQMEKEIDKLRASRSAISAADISNDFTLGEPGEAFAFSQCRNKVTV
AEASGLTGEVAQVEQFIREHVKP*
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