Tc03v2_t025430.2

Overview
NameTc03v2_t025430.2
Unique NameTc03v2_t025430.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1914
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productuncharacterized LOC18606756, transcript variant X2
NoteFiber protein Fb17
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606756
GenbankXM_018117204.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g025430Tc03v2_g025430Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p025430.2Tc03v2_p025430.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto194177auto194177Theobroma cacaoexon
exon-auto194178auto194178Theobroma cacaoexon
exon-auto194179auto194179Theobroma cacaoexon
exon-auto194180auto194180Theobroma cacaoexon
exon-auto194181auto194181Theobroma cacaoexon
exon-auto194182auto194182Theobroma cacaoexon
exon-auto194183auto194183Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto194184auto194184Theobroma cacaoCDS
CDS-auto194185auto194185Theobroma cacaoCDS
CDS-auto194186auto194186Theobroma cacaoCDS
CDS-auto194187auto194187Theobroma cacaoCDS
CDS-auto194188auto194188Theobroma cacaoCDS
CDS-auto194189auto194189Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t025430.2 ID=Tc03v2_t025430.2|Name=Tc03v2_t025430.2|organism=Theobroma cacao|type=mRNA|length=1914bp
ATGGAGGATTTTAGTGCTTTTGCTGCTTTCCAGGCAGACGATTCAGAGCG
AACACCAGATCAGAGAGGCTCTAAACGTCCACTAACTGAAGCTCAGAGAA
TAGCAAAAAATGAGCGTGATAGAGAACGCCGGCAAGAACATAAGGTGGAG
TTCGAGAGGCTTCAGAGTGTGGAGTTCCAGTTCAATCAAATTGCACCACA
GTTTAAGGACTTGCGGACCCAACTCGGGATACAGACAAACATTATTAGCA
AATTAAAGCAGGAGAACCAAAGGCTGAAGAATAGGGAGTCACATCTTAAT
AAAAGAATAGAGGAACTCGGGAATGCTCTTCCTGGAAAGGCAGCACCTGA
TAGAAACTATCGGACGCGTAAGAAGAGTCTACTCGTCCATGGGAATCAAT
TACAACCAGTGGCTCTAATAGGTGGAGAGATTAACCAAATGGTATGGAAC
ACTGCGACCGTACGGCCACAGGCACATCTTCAGCTGATGCCAGATTTAAG
TATCAGCGCTGCGGTCCAAACCCAAGTAATTCCAGCAATACCAGCGGAGA
GTGTCATTGACAAGGAAACAGTGACCAATCAGTTCACGATGAATGTCCCA
TTCCTGTTTGTGGCATCCAAGACGGAGGAAGTGACTTGCATCCGGCTGAG
GGGCAAGTGCTCAGCGAGTCCCGAGGGGGATTTGCTCCAGTACTTGTTCG
AGTGGATCCCTCACCAGACCAACCAGGAATCTTGGGAGAATTTGGGATGG
TCCCCATCAGATGTTGGCTTGATCCAGAATATGGCTCTATCCAGCCACAC
GAGTTCATCATGTGGTGCTCAACCCTGTTTTCCAATAAAATTGCTGCTCT
GGAATTCCGTAGGGACTCTGAATACCTACGGTCAGATGGTTGTGATGGAT
CTTATCAACCGTTTCCGACCGGCCGTTTTGGTCATTGCTGAGACCAAGTT
ATCTCGTGCGAGAGCGAAAGAAATCATAGACACGTTTCATTTTGATGCTC
ATCGTGTTACGCCTAACTTGGGATTTGTGGGAGGGATGTGGCTTTTGTGG
CGGTCGGATGTGGTGGAGGTTGAAGTTCTTTCCTTCACAGAGCAAGAAAT
CCACGCTCTCATTAAGGAACCACAAACAAATCAAAACCCTTCCCCATGGG
AAATCTTTAGGGACGTGAACTTTGATTCGCTTGAAGAGGCTCAATCATTT
CTGGTGTCATCTCCCACTGCACAAGTCGCAAATAGCGAGCCTGTTACTGA
AGCTCAAGGGAGTGATCCTCAAACTGGTAATACGAAGTATGCCGATCAGC
TTGTGGAAGATTTCACTAAGAAACTTGATGCCATGGACCAAAGCAAGGTG
GACTTTTCAGACTTCGAAGGCTTAAAGGAAGAACTTGAAGCAAGTGGGAT
AGGCAATTTACCTCCGTCTCTGGCTCCCATTGATGAGCGCATTAAGATGA
TGTATGGAGATATTACTGCAGACAGTAGACAGAGCCCCTGTATAGTAAGG
CCTTCCTACATCCTACTCTGCTCTGTAATCAAAGAGATGGACGAGCTAAC
ACTTGACCAAGTCGACGAGAAGAAAATGTTGTTTTGGGGAGATGCAATTA
ATAGCGGTTTGAGGATCGGATTGAGAGGGAGCTTCGCCATAGATCACTTG
AAGAACATTGCTCGTGCATACTATGGTTTAAAAGCCTGGAATGAACAAGG
CCATGATCAAAAATACCTCGAGAGCATACAGTGGAGAATGTCAGAATTAC
AGATTGAACTTCGTTCTTTAGAGGAGAAACATGCAAAGAAATTGGAAGAG
CGCGAGTCAGAGGTGCGTCGGCAGTGTATCCATGTAGCTGAACAATTTTG
GGGCAAGCCTCTTAGCACTTATTTGTTTCCCCAGCTTTTCCCTGGCTGCA
ACTCAGCCTTTTGA
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protein sequence of Tc03v2_p025430.2

>Tc03v2_p025430.2 ID=Tc03v2_p025430.2|Name=Tc03v2_p025430.2|organism=Theobroma cacao|type=polypeptide|length=638bp
MEDFSAFAAFQADDSERTPDQRGSKRPLTEAQRIAKNERDRERRQEHKVE
FERLQSVEFQFNQIAPQFKDLRTQLGIQTNIISKLKQENQRLKNRESHLN
KRIEELGNALPGKAAPDRNYRTRKKSLLVHGNQLQPVALIGGEINQMVWN
TATVRPQAHLQLMPDLSISAAVQTQVIPAIPAESVIDKETVTNQFTMNVP
FLFVASKTEEVTCIRLRGKCSASPEGDLLQYLFEWIPHQTNQESWENLGW
SPSDVGLIQNMALSSHTSSSCGAQPCFPIKLLLWNSVGTLNTYGQMVVMD
LINRFRPAVLVIAETKLSRARAKEIIDTFHFDAHRVTPNLGFVGGMWLLW
RSDVVEVEVLSFTEQEIHALIKEPQTNQNPSPWEIFRDVNFDSLEEAQSF
LVSSPTAQVANSEPVTEAQGSDPQTGNTKYADQLVEDFTKKLDAMDQSKV
DFSDFEGLKEELEASGIGNLPPSLAPIDERIKMMYGDITADSRQSPCIVR
PSYILLCSVIKEMDELTLDQVDEKKMLFWGDAINSGLRIGLRGSFAIDHL
KNIARAYYGLKAWNEQGHDQKYLESIQWRMSELQIELRSLEEKHAKKLEE
RESEVRRQCIHVAEQFWGKPLSTYLFPQLFPGCNSAF*
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