Tc03v2_t024860.3

Overview
NameTc03v2_t024860.3
Unique NameTc03v2_t024860.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1092
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
Productmitochondrial inner membrane protein OXA1, transcript variant X3
NoteMitochondrial inner membrane protein OXA1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606698
GenbankXM_007040455.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g024860Tc03v2_g024860Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p024860.3Tc03v2_p024860.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto193064auto193064Theobroma cacaoexon
exon-auto193065auto193065Theobroma cacaoexon
exon-auto193066auto193066Theobroma cacaoexon
exon-auto193067auto193067Theobroma cacaoexon
exon-auto193068auto193068Theobroma cacaoexon
exon-auto193069auto193069Theobroma cacaoexon
exon-auto193070auto193070Theobroma cacaoexon
exon-auto193071auto193071Theobroma cacaoexon
exon-auto193072auto193072Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto193073auto193073Theobroma cacaoCDS
CDS-auto193074auto193074Theobroma cacaoCDS
CDS-auto193075auto193075Theobroma cacaoCDS
CDS-auto193076auto193076Theobroma cacaoCDS
CDS-auto193077auto193077Theobroma cacaoCDS
CDS-auto193078auto193078Theobroma cacaoCDS
CDS-auto193079auto193079Theobroma cacaoCDS
CDS-auto193080auto193080Theobroma cacaoCDS
CDS-auto193081auto193081Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t024860.3 ID=Tc03v2_t024860.3|Name=Tc03v2_t024860.3|organism=Theobroma cacao|type=mRNA|length=1092bp
ATGGCTTTTTCGCGTAGCCTTTCCAATAGAGCAACCCTAATAGCTGGACG
ATATCGACCATCATTTGCGTACGTTCTCCATGAAGATGACCGTAAAAATC
AATCTTTAAACGAGTCCCAATCTCAAGAAAAACCCGGTAATTTTGTTCAA
CATAGATATTTTGGAACTGGGTTTAGTAATTCATCCTCAGGGTTTGGTGT
GTTGTTCCAAGATAGAATATGTTCCCAACTATCTTTGCATCCAAGCTCTG
GCATGTCTTTTTGTCGATATATGTCTACAACCATCGGTGGGGGGGCAGAT
ATGAGTGCAGCGGCTTCTGCTATTAATGGTGGTGGGGCAGATATGAGTGC
AGCGGCTTCTGCTGTTAATGAGGTTGCCATTGCTGCTGCTGATTCTTGGT
TTCTGGTTGCTGCCTTGCAGCATGTTATTGATACGGTTCATTCTTTTACT
GGCTTCCCCTGGTGGGCTTCCATAGTAGTGACAACCCTTTTGATTCGAGG
GGCAACTATTCCACTTCTGATAAATCAACTTAAAGCTACTTCAAAATTTA
CGCTATTGAGGCCACGCTTGGAGGAAATCAAGGAGCAGATGCAAAGCAAG
GGTATGGATCCCCTGACAGTAGCTGAAGGTCAAAAGGAAATGAAAAAGCT
TTTCAATGAATATGGTGTGACTCCGTTTAGTCCAATGAAAGGGCTGTTTA
TTCAGGGTCCCATCTTTATCAGCTTTTTCCTTGCTATTTCAAACATGGCT
GAGAAAGTGCCATCATTTAAGTGTGGTGGAGCGTATTGGTTTATGGATCT
TACTACTCCAGATGATTTATATATTCTTCCAGTTTTGACAGCCCTTAGTT
TTTTGATAACAGTGGAGTGCAACATGCAAGAAGGTATGGAAGGGAATCCG
GCTGCTGGAACTATAAAAAATGTCTCTAGGGTTTTAGCTGCTCTGACAAT
TCCATTTACCATGAGTTTCCCAAAGGCCATATTTTGTTATTGGATTACAT
CAAATTTGTTTTCCCTCACCTATGGACTAGGTGAGTCCATAAATTCCCGT
GCTCAAGGCTCCGGGGGTGAAGAAGGCTTTAGGTGTTCCTGA
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protein sequence of Tc03v2_p024860.3

>Tc03v2_p024860.3 ID=Tc03v2_p024860.3|Name=Tc03v2_p024860.3|organism=Theobroma cacao|type=polypeptide|length=364bp
MAFSRSLSNRATLIAGRYRPSFAYVLHEDDRKNQSLNESQSQEKPGNFVQ
HRYFGTGFSNSSSGFGVLFQDRICSQLSLHPSSGMSFCRYMSTTIGGGAD
MSAAASAINGGGADMSAAASAVNEVAIAAADSWFLVAALQHVIDTVHSFT
GFPWWASIVVTTLLIRGATIPLLINQLKATSKFTLLRPRLEEIKEQMQSK
GMDPLTVAEGQKEMKKLFNEYGVTPFSPMKGLFIQGPIFISFFLAISNMA
EKVPSFKCGGAYWFMDLTTPDDLYILPVLTALSFLITVECNMQEGMEGNP
AAGTIKNVSRVLAALTIPFTMSFPKAIFCYWITSNLFSLTYGLGESINSR
AQGSGGEEGFRCS*
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